Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 4.1e-119 431.4 218 100.0
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 2.7e-115 418.7 218 96.3
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 6.6e-109 397.5 217 90.3
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 1.4e-106 389.8 219 89.0
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 1.3e-104 383.3 219 87.2
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 9.2e-103 377.1 219 87.2
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 9.2e-103 377.1 217 85.7
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 9.2e-103 377.1 216 85.6
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 1.2e-102 376.7 216 85.6
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.6e-102 376.3 217 86.2
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.6e-102 376.3 220 85.9
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 3.5e-102 375.2 219 86.8
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 3.5e-102 375.2 218 85.8
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 4.6e-102 374.8 218 85.3
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 4.6e-102 374.8 218 85.3
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 7.8e-102 374.0 219 86.3
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.0e-101 373.6 220 85.0
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.3e-101 373.2 218 84.9
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.3e-101 373.2 218 84.9
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.3e-101 372.5 218 84.9
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 3.9e-101 371.7 218 84.4
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.9e-101 371.7 218 84.4
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 3.9e-101 371.7 220 84.5
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 5.0e-101 371.3 218 83.9
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 5.0e-101 371.3 218 85.3
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 5.0e-101 371.3 217 84.3
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.5e-100 369.8 218 83.9
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 5.6e-100 367.9 217 84.3
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 1.2e-99 366.7 218 84.9
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 1.6e-99 366.3 217 83.4
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.1e-99 365.9 218 83.9
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 2.1e-99 365.9 219 83.6
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 2.8e-99 365.5 219 84.5
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 3.6e-99 365.2 216 82.9
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 3.6e-99 365.2 219 84.9
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 3.6e-99 365.2 219 84.5
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 3.6e-99 365.2 216 84.3
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 6.2e-99 364.4 219 83.6
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 6.2e-99 364.4 218 82.6
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 1.0e-98 363.6 217 82.9
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 1.0e-98 363.6 229 80.8
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 1.0e-98 363.6 219 83.6
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 1.0e-98 363.6 218 83.9
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.4e-98 363.2 218 83.5
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.4e-98 363.2 219 83.1
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 1.8e-98 362.8 219 82.6
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 2.3e-98 362.5 218 83.5
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 2.3e-98 362.5 218 83.5
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 3.1e-98 362.1 216 82.9
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 5.2e-98 361.3 219 83.6
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.2e-97 360.1 218 82.1
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 1.5e-97 359.8 218 81.7
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.5e-97 359.8 218 82.1
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 2.0e-97 359.4 217 84.3
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 2.6e-97 359.0 218 81.7
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 3.4e-97 358.6 217 84.3
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 3.4e-97 358.6 216 81.9
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 3.4e-97 358.6 216 83.3
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 3.4e-97 358.6 218 81.2
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 4.4e-97 358.2 216 81.5
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 4.4e-97 358.2 216 81.5
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 5.8e-97 357.8 215 82.8
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 5.8e-97 357.8 218 81.7
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 7.5e-97 357.5 216 81.5
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 7.5e-97 357.5 216 80.1
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 7.5e-97 357.5 218 80.7
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 9.8e-97 357.1 218 81.2
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 9.8e-97 357.1 219 81.7
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 9.8e-97 357.1 215 83.3
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 1.3e-96 356.7 218 81.7
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 1.7e-96 356.3 216 80.6
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.7e-96 356.3 217 83.9
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 1.7e-96 356.3 222 81.5
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 3.7e-96 355.1 221 83.3
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 4.9e-96 354.8 217 81.1
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 6.4e-96 354.4 217 81.6
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 6.4e-96 354.4 218 82.6
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 6.4e-96 354.4 214 82.7
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 6.4e-96 354.4 218 81.2
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 8.3e-96 354.0 218 81.7
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 8.3e-96 354.0 218 81.7
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 8.3e-96 354.0 218 81.7
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 8.3e-96 354.0 217 84.8
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 1.1e-95 353.6 218 81.2
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 1.1e-95 353.6 216 80.1
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 1.4e-95 353.2 216 81.0
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.4e-95 353.2 218 81.2
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 2.4e-95 352.4 215 83.7
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 4.1e-95 351.7 218 81.2
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.1e-95 351.7 219 80.8
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 5.4e-95 351.3 217 77.9
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 5.4e-95 351.3 217 81.6
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 9.2e-95 350.5 216 80.6
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 9.2e-95 350.5 216 80.6
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 9.2e-95 350.5 221 81.4
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.2e-94 350.1 219 83.6
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.2e-94 350.1 217 79.7
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 2.0e-94 349.4 216 80.6
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.0e-94 349.4 216 80.1
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 2.7e-94 349.0 216 80.1
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 2.7e-94 349.0 218 79.4
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 3.5e-94 348.6 216 80.6
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 4.6e-94 348.2 218 80.7
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 7.8e-94 347.4 216 80.1
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 7.8e-94 347.4 219 80.8
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 7.8e-94 347.4 219 80.8
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.0e-93 347.1 217 79.7
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.3e-93 346.7 216 82.4
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 1.7e-93 346.3 218 78.9
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 1.7e-93 346.3 217 79.3
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 2.3e-93 345.9 219 79.9
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 2.3e-93 345.9 216 78.2
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 5.0e-93 344.7 215 81.4
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 8.6e-93 344.0 219 77.6
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 1.1e-92 343.6 218 78.0
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 1.1e-92 343.6 215 80.0
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 7.3e-92 340.9 223 78.5
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 4.7e-91 338.2 217 77.0
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 8.1e-91 337.4 217 76.5
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 6.6e-85 317.8 217 76.5
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 5.2e-82 308.1 216 75.5
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 1.2e-81 307.0 202 77.7
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 2.0e-81 306.2 176 82.4
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 2.2e-80 302.8 165 87.9
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.5e-76 289.3 190 74.7
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 2.5e-76 289.3 163 85.3
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 6.9e-74 281.2 192 71.9
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 6.9e-74 281.2 165 83.6
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.2e-70 270.4 172 76.2
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 1.6e-70 270.0 167 77.2
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 4.6e-70 268.5 169 76.3
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.3e-69 266.2 175 74.9
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 8.1e-67 257.7 217 64.5
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 3.6e-59 232.3 213 58.2
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.4e-58 230.3 219 58.9
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 9.3e-55 217.6 217 56.2
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 1.9e-47 193.4 158 61.4
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 1.6e-46 190.3 180 56.1
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 1.6e-46 190.3 127 74.0
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.3e-43 180.6 135 75.6
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 2.1e-43 179.9 150 58.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 2.5e-31 139.8 106 73.6
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.8e-16 89.4 112 49.1
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 3.8e-16 89.4 112 49.1
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 1.6e-06 57.4 46 58.7
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.6e-06 57.4 54 57.4


User provided reference genes

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