Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 1.7e-152 542.7 302 100.0
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 3.0e-136 488.8 302 89.4
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 2.9e-115 419.1 302 74.8
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 7.7e-84 314.7 359 54.0
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 1.9e-82 310.1 303 58.4
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 1.6e-81 307.0 300 56.0
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 5.2e-80 302.0 302 61.9
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 6.8e-80 301.6 307 59.9
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 1.4e-77 293.9 305 56.7
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 3.2e-77 292.7 301 53.8
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 1.7e-75 287.0 305 52.8
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 3.9e-75 285.8 301 55.8
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 8.6e-75 284.6 303 53.8
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 1.6e-73 280.4 303 57.1
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 4.7e-73 278.9 303 56.8
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 8.0e-73 278.1 304 58.2
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 2.3e-72 276.6 304 54.6
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 6.8e-72 275.0 303 55.8
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 6.8e-72 275.0 297 54.9
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 2.0e-71 273.5 307 51.8
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 2.0e-71 273.5 302 54.0
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 2.6e-71 273.1 299 58.2
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 5.8e-71 271.9 302 54.3
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 6.4e-70 268.5 280 55.0
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 1.1e-69 267.7 284 54.2
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 1.3e-67 260.8 304 53.3
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 2.3e-67 260.0 297 52.9
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 2.3e-67 260.0 298 57.0
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 2.3e-67 260.0 254 59.1
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 1.1e-66 257.7 305 52.5
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 1.5e-66 257.3 300 50.0
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 2.5e-66 256.5 300 50.0
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 7.3e-66 255.0 305 56.4
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 1.2e-65 254.2 265 59.2
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 1.6e-65 253.8 311 55.6
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 1.1e-64 251.1 315 51.7
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 1.1e-64 251.1 300 50.3
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 1.8e-64 250.4 305 55.1
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 3.1e-64 249.6 304 51.0
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 6.8e-64 248.4 243 63.4
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 2.0e-63 246.9 307 49.8
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 2.0e-63 246.9 311 53.1
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 2.6e-63 246.5 306 48.0
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 3.4e-63 246.1 300 47.0
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 3.4e-63 246.1 304 47.4
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 4.4e-63 245.7 307 54.7
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 7.5e-63 245.0 300 53.3
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 1.4e-61 240.7 272 52.9
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 4.1e-61 239.2 387 42.6
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 5.4e-61 238.8 215 60.5
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 5.4e-61 238.8 304 51.6
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 7.1e-61 238.4 306 48.0
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 2.7e-60 236.5 249 54.2
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 1.0e-59 234.6 306 48.0
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 1.3e-59 234.2 309 48.5
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 1.3e-59 234.2 215 60.5
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 1.7e-59 233.8 254 55.5
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 2.3e-59 233.4 270 48.9
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 2.3e-59 233.4 254 55.5
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 2.3e-59 233.4 283 48.1
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 3.9e-59 232.6 309 48.2
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 1.5e-58 230.7 235 55.3
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 9.5e-58 228.0 236 59.7
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 1.2e-57 227.6 308 51.0
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 1.2e-57 227.6 242 59.1
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 1.6e-57 227.3 310 46.5
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 2.1e-57 226.9 322 49.7
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 3.6e-57 226.1 126 92.9
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 4.7e-57 225.7 245 57.1
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 2.3e-56 223.4 294 46.6
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 4.0e-56 222.6 307 45.9
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 4.0e-56 222.6 261 49.4
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 6.8e-56 221.9 250 52.0
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 1.2e-55 221.1 307 46.6
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 1.2e-55 221.1 304 46.4
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.5e-55 220.7 192 69.3
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 1.5e-55 220.7 210 54.8
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 2.0e-55 220.3 312 46.2
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 9.9e-55 218.0 210 58.1
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 6.4e-54 215.3 256 54.3
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 1.9e-53 213.8 310 50.3
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 7.1e-53 211.8 238 52.9
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 1.2e-52 211.1 206 57.3
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 1.6e-52 210.7 294 50.0
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 2.7e-52 209.9 221 57.9
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 3.5e-52 209.5 313 46.0
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 1.0e-51 208.0 334 42.2
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 3.0e-51 206.5 308 45.1
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 6.6e-51 205.3 243 53.1
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 1.9e-50 203.8 207 58.9
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 2.5e-50 203.4 352 40.3
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 4.3e-50 202.6 194 59.8
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 1.8e-48 197.2 255 47.5
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 3.4e-47 193.0 210 58.1
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 9.9e-47 191.4 196 53.6
Hma1.2p1_0023F.1_g015540 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 3.8e-46 189.5 288 44.1
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 7.8e-44 181.8 314 39.8
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 1.7e-43 180.6 202 52.5
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 5.1e-43 179.1 347 38.9
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 8.1e-41 171.8 179 58.1
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 7.1e-29 132.1 290 35.9
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 4.3e-26 122.9 151 56.3
ATR0564G524 Amborella trichopoda HOM05D006975 ORTHO05D008736 1.3e-25 121.3 241 37.3
THA.LOC104798678 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 1.3e-25 121.3 219 42.5
TAR628G0560 Trochodendron aralioides HOM05D006975 ORTHO05D008736 1.4e-24 117.9 141 52.5
Mapoly0138s0045 Marchantia polymorpha HOM05D006975 ORTHO05D008736 3.1e-24 116.7 225 36.9
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 8.4e-22 108.6 122 61.5
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 5.7e-18 95.9 172 38.4
SEGI_37599 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 2.4e-16 90.5 60 73.3
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 9.0e-16 88.6 155 49.0
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.3e-14 84.7 63 69.8
CBR_g44391 Chara braunii HOM05D006975 ORTHO05D008736 2.9e-14 83.6 106 43.4
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 7.9e-12 75.5 79 44.3
arahy.Tifrunner.gnm1.ann1.1D0YR0 Arachis hypogaea HOM05D006975 ORTHO05D008736 1.3e-11 74.7 70 55.7
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.3e-11 74.7 94 41.5
SEGI_16371 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 1.9e-10 70.9 102 41.2
Eucgr.H00983 Eucalyptus grandis HOM05D006975 ORTHO05D008736 8.2e-09 65.5 57 57.9
Eucgr.H00986 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.8e-08 64.3 42 71.4
Sabra02G0016800 Salix brachista HOM05D006975 ORTHO05D008736 3.8e-06 56.6 97 43.3


User provided reference genes

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