Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 3.4e-231 804.7 412 100.0
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 2.1e-225 785.4 412 96.8
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 4.7e-209 731.1 408 89.0
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 8.1e-201 703.7 411 86.4
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.3e-198 696.4 412 82.3
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.3e-198 696.4 413 83.5
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 1.1e-197 693.3 412 82.5
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 4.2e-197 691.4 412 81.8
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 1.6e-196 689.5 411 83.5
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 2.1e-196 689.1 412 82.3
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.7e-195 686.0 412 82.0
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 1.1e-194 683.3 412 81.1
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 1.1e-194 683.3 409 81.4
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.5e-194 682.9 412 80.8
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.3e-194 681.8 412 81.1
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 5.6e-194 681.0 412 80.6
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 9.6e-194 680.2 412 80.6
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.3e-193 679.9 412 80.1
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.6e-193 679.5 412 80.6
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 1.8e-192 676.0 411 80.0
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 2.4e-192 675.6 413 80.6
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 3.1e-192 675.2 414 81.2
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 2.0e-191 672.5 412 80.8
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 4.4e-191 671.4 414 80.9
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 9.9e-191 670.2 413 80.9
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 2.9e-190 668.7 413 80.4
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 6.4e-190 667.5 415 80.7
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.1e-189 666.8 412 79.9
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.1e-189 666.8 410 80.0
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 1.1e-189 666.8 412 78.4
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.4e-189 666.4 416 80.3
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.4e-189 666.4 412 80.3
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 2.4e-189 665.6 414 78.5
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 4.2e-189 664.8 413 79.4
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 5.4e-189 664.5 414 80.0
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 7.1e-189 664.1 416 79.8
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 9.3e-189 663.7 413 79.4
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.2e-188 663.3 413 79.4
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 1.2e-188 663.3 412 80.8
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.2e-188 663.3 412 79.6
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.6e-188 662.9 408 79.7
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 2.1e-188 662.5 414 78.3
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.3e-187 659.8 411 79.8
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.3e-187 659.1 408 77.9
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 3.0e-187 658.7 408 80.4
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 3.9e-187 658.3 412 77.9
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 5.1e-187 657.9 412 77.2
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 5.1e-187 657.9 410 78.3
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 6.6e-187 657.5 412 77.2
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 6.6e-187 657.5 413 78.7
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 8.7e-187 657.1 415 79.3
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 3.6e-185 651.7 415 78.3
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 4.8e-185 651.4 412 75.0
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 6.2e-185 651.0 412 78.9
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 3.1e-184 648.7 412 77.2
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 4.0e-184 648.3 415 78.1
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 5.3e-184 647.9 408 77.9
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 5.3e-184 647.9 415 79.0
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 9.0e-184 647.1 408 77.9
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 2.6e-183 645.6 414 76.6
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 2.6e-183 645.6 413 76.8
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 9.9e-183 643.7 412 75.7
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.7e-182 642.9 413 77.0
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 3.8e-182 641.7 413 77.0
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 4.9e-182 641.3 445 73.3
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 3.2e-181 638.6 408 77.2
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 5.4e-181 637.9 413 76.5
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 3.5e-180 635.2 412 74.3
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 6.0e-180 634.4 414 76.6
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 6.0e-180 634.4 413 76.0
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 7.9e-180 634.0 413 76.5
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.3e-179 633.3 414 76.6
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 1.8e-179 632.9 413 75.5
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.3e-179 632.5 409 76.3
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 3.9e-179 631.7 412 75.5
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 8.7e-179 630.6 409 75.3
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 8.7e-179 630.6 413 75.5
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 8.7e-179 630.6 455 69.7
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 1.5e-178 629.8 409 76.0
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 1.9e-178 629.4 409 75.3
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 2.5e-178 629.0 409 75.1
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 2.5e-178 629.0 412 74.5
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 3.3e-178 628.6 408 75.5
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 5.6e-178 627.9 412 75.0
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 7.4e-178 627.5 409 74.6
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 1.3e-177 626.7 409 75.1
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 1.3e-177 626.7 409 75.1
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.6e-177 626.3 413 74.1
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.8e-177 625.5 409 75.3
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 6.2e-177 624.4 479 66.6
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.8e-176 622.9 409 74.6
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 5.3e-176 621.3 409 75.3
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 6.9e-176 620.9 413 74.6
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 6.9e-176 620.9 412 74.3
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.2e-175 620.2 375 80.0
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 1.5e-175 619.8 413 72.4
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 7.6e-175 617.5 414 73.4
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 7.6e-175 617.5 414 73.7
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 7.6e-175 617.5 414 73.4
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 1.7e-174 616.3 410 73.4
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 4.9e-174 614.8 409 74.1
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 6.5e-174 614.4 409 73.6
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 6.5e-174 614.4 414 72.7
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 8.4e-174 614.0 403 77.7
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 2.7e-172 609.0 417 71.7
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 5.7e-170 601.3 412 71.1
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 2.8e-169 599.0 508 62.8
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 8.2e-169 597.4 407 71.5
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.4e-168 595.9 412 70.1
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.0e-167 592.8 415 70.4
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 1.0e-166 590.5 420 71.7
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 2.2e-166 589.3 413 70.0
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 7.1e-165 584.3 464 64.0
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 3.4e-159 565.5 428 66.1
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 8.5e-158 560.8 418 67.7
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 1.0e-155 553.9 350 78.9
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 8.2e-153 544.3 408 65.2
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 2.0e-146 523.1 329 77.2
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 5.3e-144 515.0 306 81.4
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 1.7e-142 510.0 332 74.4
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 2.6e-138 496.1 408 59.3
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 1.3e-137 493.8 410 58.8
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.5e-133 479.6 346 69.9
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.5e-130 470.3 408 57.6
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 2.0e-130 469.9 417 59.2
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.7e-129 466.8 334 69.2
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 2.0e-127 459.9 417 57.8
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 1.9e-125 453.4 417 56.6
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 7.3e-109 398.3 234 81.2
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 1.6e-103 380.6 243 75.7
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 2.3e-86 323.6 431 43.6
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 8.1e-76 288.5 177 79.1
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 2.0e-74 283.9 388 43.6
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 2.6e-74 283.5 240 62.1
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 4.2e-64 249.6 328 42.1
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 8.7e-54 215.3 182 63.2
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 1.7e-49 201.1 241 51.9
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 5.1e-46 189.5 111 84.7
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 4.3e-37 159.8 152 52.6
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 2.2e-36 157.5 219 41.6
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.1e-29 135.2 80 77.5
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 3.7e-28 130.2 84 71.4
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 4.2e-24 116.7 82 65.9
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 2.7e-23 114.0 183 43.7
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 1.0e-22 112.1 91 62.6
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 1.0e-22 112.1 91 62.6
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.5e-21 108.2 90 62.2
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 2.6e-21 107.5 74 66.2
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 2.6e-21 107.5 74 66.2
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 4.4e-21 106.7 91 61.5
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 1.7e-20 104.8 74 64.9
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 8.2e-20 102.4 82 63.4
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 6.5e-17 92.8 73 60.3
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 6.5e-17 92.8 73 60.3
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 1.5e-16 91.7 66 63.6
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 8.8e-14 82.4 65 58.5
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 4.8e-12 76.6 59 62.7
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 7.0e-11 72.8 111 41.4
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 7.0e-11 72.8 86 48.8
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 9.1e-11 72.4 111 40.5


User provided reference genes

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