Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1741.9 846 100.0
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1642.9 859 94.1
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1503.0 845 85.3
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1393.3 820 81.3
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1385.9 819 81.4
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1384.8 838 79.8
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1365.1 819 80.3
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1364.0 819 80.2
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1356.3 845 78.2
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1355.9 819 79.9
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1355.1 818 80.0
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1353.2 829 78.9
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1346.6 778 81.7
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1345.9 841 77.8
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1341.3 842 78.6
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1338.9 853 77.4
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1333.2 751 83.6
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1332.8 759 83.4
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1331.2 828 78.0
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1323.9 829 78.2
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1310.8 763 81.5
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1307.0 841 75.7
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1301.6 826 76.4
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1300.0 822 77.5
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1298.5 821 75.6
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1296.2 821 76.7
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1290.8 757 80.1
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1283.5 765 80.0
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1281.9 824 74.9
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1276.9 818 76.2
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1276.2 809 76.9
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1275.8 762 79.3
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1275.4 796 77.4
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1273.8 805 75.7
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1273.5 693 87.6
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1272.7 854 74.1
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1271.1 771 78.5
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1266.9 772 78.0
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1266.1 771 78.2
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1265.0 866 73.2
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1264.6 811 74.8
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1263.4 771 77.0
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1263.1 751 79.6
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1261.9 788 76.1
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1261.1 809 75.4
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1258.0 754 78.9
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1255.0 757 78.9
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1251.5 834 73.0
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1249.6 816 74.8
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1246.9 768 77.7
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1246.5 762 77.7
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1244.6 828 73.4
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1242.6 755 78.1
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1241.5 817 74.4
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1241.5 818 74.9
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1241.1 741 79.1
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1238.8 834 74.1
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1238.8 876 70.7
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1230.7 832 71.9
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1223.0 825 72.1
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1219.5 809 72.8
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1217.2 824 72.1
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1216.1 782 75.2
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1213.4 809 73.4
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1213.0 809 73.2
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1213.0 809 73.1
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1210.3 810 73.3
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1210.3 826 71.8
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1209.1 741 76.7
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1207.6 812 72.8
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1207.2 812 73.2
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1207.2 809 72.4
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1206.0 808 72.5
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1206.0 811 72.9
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1200.7 811 72.7
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1200.3 813 72.3
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1166.4 688 80.4
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1164.1 776 73.6
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1162.9 846 69.4
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1156.7 783 70.9
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1156.0 805 71.6
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1156.0 760 73.0
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1145.2 823 67.9
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1144.8 705 77.4
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1134.8 766 72.6
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 0.0e+00 1120.5 663 79.6
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 0.0e+00 1111.3 695 76.3
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 0.0e+00 1104.0 811 66.2
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 1.2e-311 1072.8 625 81.8
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 2.8e-309 1065.1 685 74.6
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 3.7e-309 1064.7 750 68.7
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.3e-306 1056.2 900 61.0
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 2.1e-288 995.7 748 63.1
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 7.5e-286 987.3 741 61.1
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 5.1e-274 948.0 611 74.5
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 5.6e-273 944.5 753 59.1
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 2.1e-264 916.0 641 67.6
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 2.1e-248 862.8 689 63.1
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 6.9e-247 857.8 629 64.9
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-227 792.0 678 55.5
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 2.5e-220 769.6 523 69.2
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 4.3e-172 609.4 891 40.2
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 4.1e-159 566.2 603 52.4
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 1.5e-153 547.7 354 69.5
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 2.1e-131 474.2 353 67.4
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 3.0e-93 347.4 268 60.1
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.7e-88 331.6 289 61.2
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 6.5e-80 303.1 226 66.4
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 7.5e-76 289.7 254 60.2
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 8.3e-59 233.0 148 73.6
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 2.1e-46 191.8 122 73.8
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 1.2e-44 186.0 144 60.4
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 5.8e-44 183.7 127 68.5
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 5.1e-40 170.6 104 74.0
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 4.0e-29 134.4 92 69.6
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 1.2e-25 122.9 159 47.2
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 1.7e-24 119.0 114 50.0
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 3.8e-19 101.3 110 53.6
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 7.1e-18 97.1 62 75.8
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 5.1e-16 90.9 56 80.4
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 2.1e-14 85.5 47 83.0
TWI23G1065 Tripterygium wilfordii HOM05D000161 ORTHO05D414009 2.0e-12 79.0 94 56.4
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.1e-10 73.2 43 72.1
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 1.8e-08 65.9 41 75.6
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 6.7e-08 63.9 48 70.8
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 3.3e-07 61.6 70 50.0


User provided reference genes

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