Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005924 Carpinus fangiana HOM05D001999 ORTHO05D001994 4.3e-52 207.6 97 100.0
Gohir.A08G117700 Gossypium hirsutum HOM05D001999 ORTHO05D001994 6.3e-11 70.9 61 63.9
Duzib211G0185 Durio zibethinus HOM05D001999 ORTHO05D001994 1.4e-10 69.7 59 59.3
CiPaw.07G107800 Carya illinoinensis HOM05D001999 ORTHO05D001994 1.8e-10 69.3 59 57.6
Duzib133G0338 Durio zibethinus HOM05D001999 ORTHO05D001994 2.4e-10 68.9 57 63.2
Thecc.01G299000 Theobroma cacao HOM05D001999 ORTHO05D001994 3.1e-10 68.6 55 61.8
Duzib138G0033 Durio zibethinus HOM05D001999 ORTHO05D001994 9.0e-10 67.0 56 64.3
Manes.09G170900 Manihot esculenta HOM05D001999 ORTHO05D001994 2.0e-09 65.9 51 64.7
Gorai.004G142300 Gossypium raimondii HOM05D001999 ORTHO05D001994 2.6e-09 65.5 61 59.0
QL12p027615 Quercus lobata HOM05D001999 ORTHO05D001994 2.6e-09 65.5 55 60.0
Atru.chr5.1156 Acer truncatum HOM05D001999 ORTHO05D001994 3.4e-09 65.1 37 73.0
FAN09G2669 Fragaria x ananassa HOM05D001999 ORTHO05D001994 3.4e-09 65.1 51 60.8
Solyc01g099790.3 Solanum lycopersicum HOM05D001999 ORTHO05D001994 3.4e-09 65.1 47 59.6
MD12G1212400 Malus domestica HOM05D001999 ORTHO05D001994 4.5e-09 64.7 47 66.0
COL.COLO4_23356 Corchorus olitorius HOM05D001999 ORTHO05D001994 5.9e-09 64.3 53 60.4
FAN14G1734 Fragaria x ananassa HOM05D001999 ORTHO05D001994 5.9e-09 64.3 49 61.2
FAN02G3011 Fragaria x ananassa HOM05D001999 ORTHO05D001994 7.6e-09 63.9 53 58.5
GSVIVG01028007001 Vitis vinifera HOM05D001999 ORTHO05D001994 7.6e-09 63.9 48 64.6
Ciclev10001227m.g Citrus clementina HOM05D001999 ORTHO05D001994 1.3e-08 63.2 47 61.7
TWI36G1062 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 1.3e-08 63.2 49 65.3
TAR633G2461 Trochodendron aralioides HOM05D001999 ORTHO05D001994 1.7e-08 62.8 41 68.3
ClCG03G017310 Citrullus lanatus HOM05D001999 ORTHO05D001994 2.2e-08 62.4 48 62.5
MELO3C015298.2 Cucumis melo HOM05D001999 ORTHO05D001994 2.2e-08 62.4 48 62.5
Gohir.D08G138700 Gossypium hirsutum HOM05D001999 ORTHO05D001994 2.2e-08 62.4 61 59.0
Sed0027191 Sechium edule HOM05D001999 ORTHO05D001994 2.2e-08 62.4 48 62.5
Rhsim01G0284400 Rhododendron simsii HOM05D001999 ORTHO05D001994 2.9e-08 62.0 54 53.7
AL4G47270 Arabidopsis lyrata HOM05D001999 ORTHO05D001994 3.8e-08 61.6 59 57.6
CANSAT25G1967 Cannabis sativa HOM05D001999 ORTHO05D001994 3.8e-08 61.6 34 76.5
CANSAT25G3193 Cannabis sativa HOM05D001999 ORTHO05D001994 3.8e-08 61.6 34 76.5
FvH4_6g06620 Fragaria vesca HOM05D001999 ORTHO05D001994 3.8e-08 61.6 49 59.2
Lj9C146G5 Lonicera japonica HOM05D001999 ORTHO05D001994 3.8e-08 61.6 47 61.7
Nn4g25807 Nelumbo nucifera HOM05D001999 ORTHO05D001994 3.8e-08 61.6 48 62.5
Prupe.6G320100 Prunus persica HOM05D001999 ORTHO05D001994 3.8e-08 61.6 50 56.0
CSS0032431 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 5.0e-08 61.2 29 89.7
Aa31LG1G29020 Aethionema arabicum HOM05D001999 ORTHO05D001994 6.5e-08 60.8 55 54.5
EL10Ac4g09908 Beta vulgaris HOM05D001999 ORTHO05D001994 6.5e-08 60.8 47 61.7
Gorai.013G205600 Gossypium raimondii HOM05D001999 ORTHO05D001994 6.5e-08 60.8 48 62.5
Hund07102 Selenicereus undatus HOM05D001999 ORTHO05D001994 6.5e-08 60.8 48 62.5
Ciclev10020382m.g Citrus clementina HOM05D001999 ORTHO05D001994 8.5e-08 60.5 30 86.7
CsaV3_1G038740 Cucumis sativus L. HOM05D001999 ORTHO05D001994 8.5e-08 60.5 48 60.4
Duzib128G0926 Durio zibethinus HOM05D001999 ORTHO05D001994 8.5e-08 60.5 49 63.3
Hma1.2p1_0209F.1_g088440 Hydrangea macrophylla HOM05D001999 ORTHO05D001994 8.5e-08 60.5 28 89.3
Gohir.A13G109800 Gossypium hirsutum HOM05D001999 ORTHO05D001994 1.1e-07 60.1 51 56.9
Gohir.D13G112400 Gossypium hirsutum HOM05D001999 ORTHO05D001994 1.1e-07 60.1 51 56.9
Gorai.013G126200 Gossypium raimondii HOM05D001999 ORTHO05D001994 1.1e-07 60.1 51 56.9
Haze_04134 Corylus avellana HOM05D001999 ORTHO05D001994 1.4e-07 59.7 48 62.5
Sopen01g043310 Solanum pennellii HOM05D001999 ORTHO05D001994 1.4e-07 59.7 47 59.6
PGSC0003DMG400024717 Solanum tuberosum HOM05D001999 ORTHO05D001994 1.4e-07 59.7 48 56.2
Thecc.05G313600 Theobroma cacao HOM05D001999 ORTHO05D001994 1.4e-07 59.7 49 63.3
TAR365G1043 Trochodendron aralioides HOM05D001999 ORTHO05D001994 1.4e-07 59.7 47 63.8
Nitab4.5_0010216g0020 Nicotiana tabacum HOM05D001999 ORTHO05D001994 1.9e-07 59.3 50 56.0
TAR362G0062 Trochodendron aralioides HOM05D001999 ORTHO05D001994 1.9e-07 59.3 41 65.9
HanXRQChr11g0339901 Helianthus annuus HOM05D001999 ORTHO05D001994 2.5e-07 58.9 47 59.6
Actinidia24828 Actinidia chinensis HOM05D001999 ORTHO05D001994 3.2e-07 58.5 32 78.1
MSTRG.27977 Avicennia marina HOM05D001999 ORTHO05D001994 3.2e-07 58.5 47 63.8
Nitab4.5_0003844g0010 Nicotiana tabacum HOM05D001999 ORTHO05D001994 3.2e-07 58.5 50 56.0
Peaxi162Scf00037g01221 Petunia axillaris HOM05D001999 ORTHO05D001994 3.2e-07 58.5 50 56.0
THA.LOC104817500 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 3.2e-07 58.5 46 60.9
Lj5A391T59 Lonicera japonica HOM05D001999 ORTHO05D001994 4.2e-07 58.2 52 53.8
Lj5A396T57 Lonicera japonica HOM05D001999 ORTHO05D001994 4.2e-07 58.2 52 53.8
Oeu010920.1 Olea europaea HOM05D001999 ORTHO05D001994 4.2e-07 58.2 47 59.6
Hund05420 Selenicereus undatus HOM05D001999 ORTHO05D001994 4.2e-07 58.2 36 75.0
vmacro02456 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 4.2e-07 58.2 29 86.2
Actinidia35557 Actinidia chinensis HOM05D001999 ORTHO05D001994 5.5e-07 57.8 29 79.3
FAN05G1277 Fragaria x ananassa HOM05D001999 ORTHO05D001994 5.5e-07 57.8 49 57.1
Glyma.10G151500 Glycine max HOM05D001999 ORTHO05D001994 5.5e-07 57.8 46 60.9
Psat0s1830g0240 Pisum sativum HOM05D001999 ORTHO05D001994 5.5e-07 57.8 50 54.0
SGA_v2.0_scaffold80G25894 Striga asiatica HOM05D001999 ORTHO05D001994 5.5e-07 57.8 47 59.6
Actinidia21053 Actinidia chinensis HOM05D001999 ORTHO05D001994 7.2e-07 57.4 32 75.0
Actinidia24344 Actinidia chinensis HOM05D001999 ORTHO05D001994 7.2e-07 57.4 42 57.1
BcaC05g25970 Brassica carinata HOM05D001999 ORTHO05D001994 7.2e-07 57.4 50 54.0
C05p19250 Brassica napus HOM05D001999 ORTHO05D001994 7.2e-07 57.4 50 54.0
BolC5t30625H Brassica oleracea HOM05D001999 ORTHO05D001994 7.2e-07 57.4 50 54.0
Ca_10133_v3 Cicer arietinum L. HOM05D001999 ORTHO05D001994 7.2e-07 57.4 56 57.1
ECA236G3557 Erigeron canadensis HOM05D001999 ORTHO05D001994 7.2e-07 57.4 50 56.0
Lsat_1_v5_gn_7_72040 Lactuca sativa HOM05D001999 ORTHO05D001994 7.2e-07 57.4 41 58.5
QL03p020135 Quercus lobata HOM05D001999 ORTHO05D001994 7.2e-07 57.4 52 51.9
Dinv40334 Davidia involucrata HOM05D001999 ORTHO05D001994 9.3e-07 57.0 47 61.7
Lj5g0002371 Lotus japonicus HOM05D001999 ORTHO05D001994 9.3e-07 57.0 48 56.2
MBI19_g13195_MAGBIO Magnolia biondii HOM05D001999 ORTHO05D001994 9.3e-07 57.0 48 60.4
Medtr7g112740 Medicago truncatula HOM05D001999 ORTHO05D001994 9.3e-07 57.0 47 57.4
Rhsim13G0010900 Rhododendron simsii HOM05D001999 ORTHO05D001994 9.3e-07 57.0 29 82.8
Sc06g0004090 Simmondsia chinensis HOM05D001999 ORTHO05D001994 9.3e-07 57.0 41 65.9
TAR636G1732 Trochodendron aralioides HOM05D001999 ORTHO05D001994 9.3e-07 57.0 29 79.3
vmacro15001 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 9.3e-07 57.0 33 69.7
BcaC07g40784 Brassica carinata HOM05D001999 ORTHO05D001994 1.2e-06 56.6 50 54.0
MD10G1168300 Malus domestica HOM05D001999 ORTHO05D001994 1.2e-06 56.6 48 58.3
Phvul.007G197300 Phaseolus vulgaris HOM05D001999 ORTHO05D001994 1.2e-06 56.6 46 58.7
Sabra05G0030100 Salix brachista HOM05D001999 ORTHO05D001994 1.2e-06 56.6 48 58.3
AUR62000756 Chenopodium quinoa HOM05D001999 ORTHO05D001994 1.6e-06 56.2 47 59.6
AUR62005212 Chenopodium quinoa HOM05D001999 ORTHO05D001994 1.6e-06 56.2 47 59.6
Gohir.A13G174400 Gossypium hirsutum HOM05D001999 ORTHO05D001994 1.6e-06 56.2 48 60.4
Gohir.D13G180200 Gossypium hirsutum HOM05D001999 ORTHO05D001994 1.6e-06 56.2 48 60.4
Lalb_Chr21g0310571 Lupinus albus HOM05D001999 ORTHO05D001994 1.6e-06 56.2 62 45.2
Sp4g29640 Schrenkiella parvula HOM05D001999 ORTHO05D001994 1.6e-06 56.2 49 57.1
SGA_v2.0_scaffold586G53057 Striga asiatica HOM05D001999 ORTHO05D001994 1.6e-06 56.2 47 59.6
THA.LOC104802795 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 1.6e-06 56.2 45 57.8
C07p38590 Brassica napus HOM05D001999 ORTHO05D001994 2.1e-06 55.8 30 73.3
C08p37750 Brassica napus HOM05D001999 ORTHO05D001994 2.1e-06 55.8 50 54.0
BolC7t44380H Brassica oleracea HOM05D001999 ORTHO05D001994 2.1e-06 55.8 30 73.3
DCAR_003361 Daucus carota HOM05D001999 ORTHO05D001994 2.1e-06 55.8 47 61.7
DCAR_022142 Daucus carota HOM05D001999 ORTHO05D001994 2.1e-06 55.8 43 58.1
Lalb_Chr06g0167721 Lupinus albus HOM05D001999 ORTHO05D001994 2.1e-06 55.8 38 65.8
RcHm_v2.0_Chr3g0455821 Rosa chinensis HOM05D001999 ORTHO05D001994 2.1e-06 55.8 29 79.3
GSVIVG01031134001 Vitis vinifera HOM05D001999 ORTHO05D001994 2.1e-06 55.8 47 55.3
A05p00260 Brassica napus HOM05D001999 ORTHO05D001994 2.7e-06 55.5 50 54.0
BraA05t19023Z Brassica rapa HOM05D001999 ORTHO05D001994 2.7e-06 55.5 50 54.0
CSS0018606 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 2.7e-06 55.5 29 79.3
CSS0039587 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 2.7e-06 55.5 29 79.3
Migut.N02088 Erythranthe guttata HOM05D001999 ORTHO05D001994 2.7e-06 55.5 50 56.0
Eucgr.B01912 Eucalyptus grandis HOM05D001999 ORTHO05D001994 2.7e-06 55.5 45 57.8
PSO210G6703 Papaver somniferum HOM05D001999 ORTHO05D001994 2.7e-06 55.5 27 81.5
Rhsim05G0138600 Rhododendron simsii HOM05D001999 ORTHO05D001994 2.7e-06 55.5 29 79.3
Atru.chr2.75 Acer truncatum HOM05D001999 ORTHO05D001994 3.6e-06 55.1 42 61.9
Actinidia19777 Actinidia chinensis HOM05D001999 ORTHO05D001994 3.6e-06 55.1 47 59.6
Aa31LG5G15830 Aethionema arabicum HOM05D001999 ORTHO05D001994 3.6e-06 55.1 53 50.9
Carub.0004s3042 Capsella rubella HOM05D001999 ORTHO05D001994 3.6e-06 55.1 57 50.9
Cc02_g34200 Coffea canephora HOM05D001999 ORTHO05D001994 3.6e-06 55.1 29 79.3
Thhalv10001505m.g Eutrema salsugineum HOM05D001999 ORTHO05D001994 3.6e-06 55.1 49 57.1
Gorai.007G300400 Gossypium raimondii HOM05D001999 ORTHO05D001994 3.6e-06 55.1 29 75.9
Lalb_Chr02g0148101 Lupinus albus HOM05D001999 ORTHO05D001994 3.6e-06 55.1 29 75.9
Sc16g0008800 Simmondsia chinensis HOM05D001999 ORTHO05D001994 3.6e-06 55.1 29 79.3
THA.LOC104805890 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 3.6e-06 55.1 47 55.3
BcaB02g08752 Brassica carinata HOM05D001999 ORTHO05D001994 4.6e-06 54.7 49 55.1
A03p34190 Brassica napus HOM05D001999 ORTHO05D001994 4.6e-06 54.7 63 49.2
BraA03t12593Z Brassica rapa HOM05D001999 ORTHO05D001994 4.6e-06 54.7 63 49.2
Cfa006634 Carpinus fangiana HOM05D001999 ORTHO05D001994 4.6e-06 54.7 29 75.9
Lalb_Chr18g0045791 Lupinus albus HOM05D001999 ORTHO05D001994 4.6e-06 54.7 29 75.9
Oeu043739.1 Olea europaea HOM05D001999 ORTHO05D001994 4.6e-06 54.7 47 59.6
Potri.005G024700 Populus trichocarpa HOM05D001999 ORTHO05D001994 4.6e-06 54.7 29 75.9
Potri.013G015600 Populus trichocarpa HOM05D001999 ORTHO05D001994 4.6e-06 54.7 29 75.9
PGR031G0021 Punica granatum HOM05D001999 ORTHO05D001994 4.6e-06 54.7 29 75.9
PGR083G1363 Punica granatum HOM05D001999 ORTHO05D001994 4.6e-06 54.7 41 61.0
Sabra13G0013700 Salix brachista HOM05D001999 ORTHO05D001994 4.6e-06 54.7 29 75.9
Sabra13G0013900 Salix brachista HOM05D000092 ORTHO05D000042 4.6e-06 54.7 29 75.9
Sabra13G0015200 Salix brachista HOM05D000070 ORTHO05D001994 4.6e-06 54.7 29 75.9
Sabra13G0017800 Salix brachista HOM05D001999 ORTHO05D001994 4.6e-06 54.7 32 68.8
Sabra13G0019100 Salix brachista HOM05D001999 ORTHO05D001994 4.6e-06 54.7 29 75.9
TWI23G1185 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 4.6e-06 54.7 30 76.7
TWI56G0125 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 4.6e-06 54.7 29 79.3
Aqoxy5G00748 Aquilegia oxysepala HOM05D001999 ORTHO05D001994 6.1e-06 54.3 46 56.5
Hund21714 Selenicereus undatus HOM05D001999 ORTHO05D001994 6.1e-06 54.3 29 79.3
BcaC02g12548 Brassica carinata HOM05D001999 ORTHO05D001994 7.9e-06 53.9 44 59.1
C04p00170 Brassica napus HOM05D001999 ORTHO05D001994 7.9e-06 53.9 43 55.8
BolC4t21664H Brassica oleracea HOM05D001999 ORTHO05D001994 7.9e-06 53.9 42 61.9
Cpa.g.sc327.4 Carica papaya HOM05D001999 ORTHO05D001994 7.9e-06 53.9 29 75.9
Glyma.03G235100 Glycine max HOM05D001999 ORTHO05D001994 7.9e-06 53.9 47 55.3
Gohir.A11G268300 Gossypium hirsutum HOM05D001999 ORTHO05D001994 7.9e-06 53.9 29 75.9
Gohir.D11G278200 Gossypium hirsutum HOM05D001999 ORTHO05D001994 7.9e-06 53.9 29 75.9
PSO170G6103 Papaver somniferum HOM05D001999 ORTHO05D001994 7.9e-06 53.9 27 77.8


User provided reference genes

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