Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 0.0e+00 1598.6 869 100.0
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 0.0e+00 1522.3 870 95.2
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 0.0e+00 1244.6 867 78.9
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 0.0e+00 1229.2 866 77.3
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 1.0e-301 1040.0 873 65.4
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 2.0e-297 1025.8 867 66.4
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.2e-290 1001.1 886 64.9
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 5.7e-289 997.7 884 64.1
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 7.0e-287 990.7 871 64.8
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 3.5e-286 988.4 864 64.7
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.1e-284 983.4 877 64.2
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 3.6e-283 978.4 881 66.2
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 3.7e-280 968.4 866 63.3
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 7.0e-279 964.1 874 63.8
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 5.9e-278 961.1 885 62.4
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.3e-277 959.9 875 63.2
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 5.0e-277 958.0 869 62.7
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.9e-276 956.1 881 63.7
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 6.3e-272 941.0 873 61.7
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.1e-271 940.3 878 61.3
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 3.5e-270 935.3 871 62.5
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 8.6e-269 930.6 874 61.7
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 8.6e-269 930.6 873 62.8
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 1.1e-268 930.2 824 64.8
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 8.0e-267 924.1 863 60.6
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 4.0e-266 921.8 866 61.3
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 4.0e-266 921.8 876 61.1
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 3.4e-265 918.7 853 61.4
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 3.7e-264 915.2 862 61.3
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 8.3e-264 914.1 865 59.0
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 2.4e-263 912.5 876 61.2
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.6e-262 909.8 857 62.3
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.1e-260 903.7 875 60.6
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 2.5e-260 902.5 901 60.3
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 4.3e-260 901.7 890 59.3
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 1.6e-259 899.8 870 59.5
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.8e-259 899.0 857 62.5
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 1.4e-258 896.7 871 59.9
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.8e-258 896.3 880 58.4
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.0e-258 895.2 876 61.9
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 2.0e-257 892.9 876 60.6
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 7.5e-257 891.0 894 61.3
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.3e-256 890.2 849 60.9
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 2.9e-256 889.0 879 60.0
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 8.3e-256 887.5 879 60.0
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 2.4e-255 885.9 829 61.2
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 2.4e-255 885.9 872 59.6
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 4.1e-255 885.2 873 59.7
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.6e-254 883.2 852 60.3
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 1.7e-253 879.8 887 58.2
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 2.3e-253 879.4 868 57.8
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.3e-252 875.5 875 59.0
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 4.3e-252 875.2 822 59.5
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 5.6e-252 874.8 848 61.0
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 1.6e-251 873.2 871 58.8
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 2.8e-251 872.5 879 57.9
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 6.2e-251 871.3 847 61.0
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 1.1e-250 870.5 873 59.2
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.8e-250 869.8 870 58.7
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.2e-249 867.1 867 58.7
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 5.8e-249 864.8 870 58.7
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 7.5e-249 864.4 868 58.3
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 1.4e-247 860.1 869 57.8
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 4.1e-247 858.6 864 59.7
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 5.4e-247 858.2 873 58.3
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 5.1e-245 851.7 872 57.5
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.3e-244 849.0 868 57.3
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.2e-243 847.0 873 58.3
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 2.8e-243 845.9 871 57.6
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 8.1e-243 844.3 854 56.6
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 2.6e-241 839.3 847 58.6
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 3.4e-241 839.0 871 57.1
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 8.4e-240 834.3 867 54.8
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 2.4e-239 832.8 846 56.9
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 2.3e-237 826.2 852 56.2
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 7.1e-231 804.7 755 61.6
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 9.6e-228 794.3 850 55.5
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.8e-227 792.7 883 52.8
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 4.8e-227 792.0 853 55.2
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 2.4e-226 789.6 859 54.9
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 3.1e-226 789.3 844 55.5
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 6.9e-226 788.1 842 56.1
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 2.9e-224 782.7 689 63.3
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.6e-222 776.9 878 55.1
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 8.7e-221 771.2 842 55.0
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.9e-220 770.0 782 56.4
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.8e-218 763.5 855 53.3
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 9.0e-218 761.1 842 54.5
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.3e-216 757.3 844 53.8
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.3e-216 757.3 796 54.8
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 4.9e-216 755.4 843 54.0
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.6e-214 750.4 880 51.6
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 7.9e-214 748.0 868 52.4
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 3.0e-213 746.1 840 52.0
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 2.9e-208 729.6 826 52.9
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.4e-207 727.2 868 51.8
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.3e-205 720.7 848 51.5
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 7.4e-204 714.9 846 51.2
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-201 707.2 852 51.6
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 1.9e-199 700.3 846 50.5
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 1.9e-199 700.3 872 50.2
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 3.2e-199 699.5 874 49.2
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 4.2e-199 699.1 859 50.1
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 4.6e-198 695.7 843 49.8
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.4e-194 684.1 674 59.9
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 2.0e-188 663.7 875 48.8
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.7e-187 660.6 845 48.5
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 5.3e-186 655.6 847 50.4
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 7.0e-186 655.2 618 57.0
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 3.5e-185 652.9 708 54.5
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 5.9e-185 652.1 532 67.1
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 3.2e-183 646.4 846 46.9
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.7e-182 643.3 668 58.8
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.0e-181 641.3 865 48.0
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 5.9e-169 599.0 856 46.0
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 6.8e-165 585.5 846 46.7
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 2.4e-162 577.0 857 46.1
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.4e-149 534.6 1044 37.7
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 2.0e-140 504.2 411 68.1
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 2.6e-140 503.8 451 61.2
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 3.2e-138 496.9 825 42.1
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.4e-122 444.9 874 37.5
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 2.1e-121 441.0 456 56.4
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 2.5e-119 434.1 756 42.6
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 3.3e-119 433.7 1006 35.5
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 7.9e-105 386.0 954 34.8
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.8e-104 384.8 349 59.6
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 2.3e-104 384.4 953 35.0
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 2.9e-99 367.5 350 59.1
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.0e-96 359.0 248 74.2
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.3e-94 352.1 285 65.3
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 2.4e-85 321.2 864 32.9
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 2.4e-85 321.2 864 32.9
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 5.9e-84 316.6 886 32.6
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 3.0e-80 304.3 959 30.8
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 3.3e-71 274.2 313 50.8
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 7.7e-68 263.1 181 71.3
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 5.2e-64 250.4 414 44.2
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 5.7e-63 246.9 414 44.0
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-62 245.7 420 42.9
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.7e-62 245.4 427 43.1
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 2.8e-62 244.6 735 31.2
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 5.3e-61 240.4 155 74.8
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 7.0e-61 240.0 374 44.9
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.4e-56 225.7 409 42.1
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 2.6e-55 221.5 842 26.6
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 6.5e-51 206.8 426 37.1
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-50 206.1 373 41.3
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.0e-48 199.5 325 46.2
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 1.5e-47 195.7 312 44.6
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 2.0e-47 195.3 317 44.2
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.4e-45 189.1 178 61.8
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.4e-45 189.1 180 57.8
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 6.1e-41 173.7 146 61.6
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.4e-37 162.5 205 49.8
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 7.8e-36 156.8 672 26.8
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 2.3e-35 155.2 317 39.7
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 3.9e-35 154.5 316 39.2
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 5.0e-35 154.1 167 55.1
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 6.2e-33 147.1 131 58.0
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 5.2e-32 144.1 452 31.0
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.5e-31 142.5 156 49.4
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.7e-30 137.9 133 59.4
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.4e-29 136.0 183 43.2
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.1e-29 134.4 954 24.3
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 9.2e-29 133.3 313 37.7
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-28 132.9 313 37.7
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.3e-26 124.4 123 61.0
Cfa021652 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.3e-19 102.8 56 89.3
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.3e-19 102.8 802 24.1
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 2.9e-14 85.1 217 31.3
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.1e-12 79.0 203 36.0
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 1.3e-11 76.3 79 51.9
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 2.5e-10 72.0 336 29.8
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 9.6e-10 70.1 127 45.7
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 1.8e-08 65.9 91 42.9
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 1.3e-06 59.7 99 38.4


User provided reference genes

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