Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 1.5e-144 516.2 257 100.0
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 2.2e-132 475.7 257 92.6
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 1.4e-131 473.0 257 92.6
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 5.4e-110 401.4 257 77.8
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 3.8e-108 395.2 260 78.1
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 4.6e-93 345.1 262 65.6
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 1.6e-90 336.7 262 64.5
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 1.8e-89 333.2 262 64.9
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 2.2e-87 326.2 258 63.6
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 2.2e-87 326.2 258 63.6
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 8.3e-87 324.3 258 66.3
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 8.3e-87 324.3 258 66.3
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 8.3e-87 324.3 258 66.3
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 8.3e-87 324.3 258 65.5
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.4e-86 322.8 258 65.5
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 5.4e-86 321.6 258 65.5
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 7.0e-86 321.2 262 63.4
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.2e-85 320.5 258 65.9
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.2e-85 320.5 258 65.9
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 1.2e-85 320.5 262 60.7
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 1.6e-85 320.1 258 62.8
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 4.3e-83 312.0 256 61.7
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 1.6e-82 310.1 258 59.7
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 6.2e-82 308.1 256 60.9
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 1.4e-81 307.0 261 60.5
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 1.8e-81 306.6 256 60.5
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 2.3e-81 306.2 260 61.9
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 4.0e-81 305.4 263 59.3
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 8.9e-81 304.3 263 60.1
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 1.5e-80 303.5 263 60.8
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 4.4e-80 302.0 263 60.5
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 5.8e-80 301.6 257 59.5
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 3.7e-79 298.9 263 60.8
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 3.7e-79 298.9 263 60.8
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 4.9e-79 298.5 265 59.2
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 8.3e-79 297.7 263 59.3
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 8.3e-79 297.7 262 59.2
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 1.9e-78 296.6 263 58.6
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 3.2e-78 295.8 263 60.1
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 3.2e-78 295.8 263 58.2
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 4.1e-78 295.4 260 60.0
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 1.2e-77 293.9 253 60.5
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 1.2e-77 293.9 257 59.9
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 6.0e-77 291.6 258 59.3
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 1.7e-76 290.0 263 57.8
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 1.7e-76 290.0 220 67.7
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 1.5e-75 287.0 263 56.7
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 5.6e-75 285.0 252 58.3
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 3.6e-74 282.3 264 58.3
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 6.2e-74 281.6 263 57.0
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 1.1e-73 280.8 263 56.3
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 1.4e-73 280.4 262 55.3
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 3.1e-73 279.3 260 55.4
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 5.2e-73 278.5 261 54.4
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 5.2e-73 278.5 264 55.3
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 1.5e-72 276.9 260 55.8
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 1.5e-72 276.9 264 54.9
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 2.6e-72 276.2 261 53.6
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 4.4e-72 275.4 260 54.2
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 5.8e-72 275.0 258 55.8
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 7.6e-72 274.6 236 61.4
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 1.3e-71 273.9 260 56.5
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 2.2e-71 273.1 215 65.1
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 1.4e-70 270.4 254 57.5
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 1.4e-70 270.4 260 54.6
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 1.9e-70 270.0 272 52.6
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 1.9e-70 270.0 262 54.6
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 2.4e-70 269.6 256 56.6
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 2.4e-70 269.6 256 56.6
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 2.4e-70 269.6 256 56.6
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 3.2e-70 269.2 263 53.6
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 4.1e-70 268.9 264 53.0
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 7.1e-70 268.1 261 54.8
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 9.2e-70 267.7 259 54.4
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 1.2e-69 267.3 261 53.6
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 1.2e-69 267.3 261 54.0
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 6.0e-69 265.0 264 54.9
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 1.0e-68 264.2 224 59.4
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 1.7e-68 263.5 261 52.9
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 3.0e-68 262.7 263 52.9
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 3.9e-68 262.3 262 53.1
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 3.9e-68 262.3 263 52.5
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 5.1e-68 261.9 253 54.5
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 5.1e-68 261.9 262 53.8
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 8.6e-68 261.2 225 61.8
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 9.6e-67 257.7 256 52.0
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 4.0e-65 252.3 317 45.1
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 2.4e-62 243.0 227 55.9
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 2.7e-61 239.6 267 51.3
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 3.9e-60 235.7 267 48.7
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 1.9e-59 233.4 225 55.6
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 1.3e-58 230.7 226 52.2
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.6e-58 230.3 254 48.8
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 1.8e-57 226.9 264 48.5
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 1.5e-56 223.8 233 51.9
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 3.4e-56 222.6 242 49.6
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 1.1e-51 207.6 165 63.0
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 1.1e-51 207.6 230 50.9
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 7.4e-51 204.9 164 61.6
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 6.2e-50 201.8 257 45.9
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 3.5e-45 186.0 180 53.9
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 6.0e-45 185.3 151 60.9
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 9.0e-41 171.4 150 55.3
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 9.0e-41 171.4 150 55.3
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 9.0e-41 171.4 150 55.3
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 1.9e-38 163.7 150 52.7
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 2.5e-38 163.3 147 53.1
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 1.9e-35 153.7 249 38.6
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 1.6e-34 150.6 112 62.5
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 2.0e-32 143.7 124 54.0
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 1.3e-31 141.0 163 47.9
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 1.3e-31 141.0 153 51.6
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 8.5e-31 138.3 112 61.6
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 1.9e-30 137.1 260 33.8
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 1.0e-28 131.3 201 38.8
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 3.3e-27 126.3 280 31.1
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 2.2e-26 123.6 104 57.7
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 2.0e-24 117.1 157 47.8
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 4.5e-24 115.9 104 54.8
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 1.8e-20 104.0 96 57.3
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 3.0e-20 103.2 79 63.3
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 9.7e-19 98.2 92 50.0
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 1.3e-18 97.8 169 37.3
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 4.1e-17 92.8 71 57.7
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 4.5e-16 89.4 76 57.9
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 3.2e-14 83.2 184 33.7
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 1.0e-12 78.2 48 77.1
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 1.5e-11 74.3 65 50.8
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 2.2e-10 70.5 95 41.1
MD01G1114600 Malus domestica HOM05D005673 ORTHO05D007081 5.5e-06 55.8 67 52.2
HanXRQChr12g0360941 Helianthus annuus HOM05D005673 ORTHO05D007081 7.2e-06 55.5 69 40.6


User provided reference genes

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