Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 9.0e-171 603.6 324 100.0
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 3.9e-158 561.6 325 87.7
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 4.2e-152 541.6 324 82.7
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 3.0e-150 535.4 324 80.9
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 9.6e-149 530.4 324 81.2
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.4e-147 526.6 328 79.9
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 2.7e-135 485.7 324 75.3
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.0e-133 479.6 329 72.3
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 2.8e-132 475.7 319 72.1
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.5e-130 469.9 322 70.5
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.5e-130 468.4 325 71.7
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 2.9e-129 465.7 326 73.0
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.8e-129 465.3 326 72.1
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.8e-129 465.3 326 72.1
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 5.0e-129 464.9 324 72.5
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 7.2e-128 461.1 321 72.3
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 1.2e-127 460.3 321 72.6
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.2e-127 460.3 320 73.4
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 2.1e-127 459.5 319 70.5
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 3.6e-127 458.8 327 72.5
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.4e-126 456.8 325 71.4
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.8e-126 456.4 324 69.4
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.8e-126 456.4 319 69.6
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 2.3e-126 456.1 322 70.2
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 3.0e-126 455.7 323 70.0
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 5.1e-126 454.9 324 70.1
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 5.1e-126 454.9 321 72.0
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 5.1e-126 454.9 337 68.0
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 6.7e-126 454.5 327 69.7
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 8.8e-126 454.1 353 66.9
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.1e-125 453.8 322 71.1
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 5.7e-125 451.4 338 68.3
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 5.7e-125 451.4 318 71.4
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.2e-124 449.5 338 68.0
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.1e-123 447.2 338 66.6
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.4e-123 446.8 320 71.2
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.4e-123 446.0 347 64.8
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.0e-122 443.0 322 69.6
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 2.0e-122 443.0 327 70.3
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 2.6e-122 442.6 316 70.6
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 1.0e-121 440.7 293 77.5
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.7e-121 439.9 350 65.7
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 2.2e-121 439.5 323 69.0
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 3.8e-121 438.7 320 69.4
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 8.5e-121 437.6 316 69.3
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.4e-120 436.8 324 68.5
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.4e-120 436.8 323 68.1
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.9e-120 436.4 321 70.7
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 7.2e-120 434.5 328 68.6
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.6e-119 433.3 324 67.6
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 3.6e-119 432.2 325 68.0
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 2.3e-118 429.5 319 66.1
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 3.3e-117 425.6 325 66.5
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 9.7e-117 424.1 326 66.6
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.7e-116 423.3 321 67.0
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 3.7e-116 422.2 317 67.8
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 8.2e-116 421.0 334 64.7
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 5.3e-115 418.3 324 65.4
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 7.0e-115 417.9 324 65.4
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 2.0e-114 416.4 325 64.9
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 5.9e-114 414.8 323 65.3
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 5.9e-114 414.8 322 64.9
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 5.9e-114 414.8 328 65.2
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 7.7e-114 414.5 322 66.1
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 7.7e-114 414.5 320 65.3
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 2.2e-113 412.9 312 65.7
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.9e-113 412.5 324 64.5
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 3.8e-113 412.1 319 64.3
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.9e-112 409.8 320 64.1
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 4.2e-112 408.7 310 65.5
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 5.5e-112 408.3 319 64.9
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 2.1e-111 406.4 307 66.8
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 6.1e-111 404.8 312 64.1
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 8.0e-111 404.4 299 67.9
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 5.2e-110 401.7 326 64.1
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.2e-109 400.6 322 62.4
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.2e-109 400.6 253 75.1
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.2e-109 400.6 332 63.6
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 2.6e-109 399.4 291 68.0
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 3.4e-109 399.1 314 64.6
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 5.7e-109 398.3 312 65.4
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 7.5e-109 397.9 328 63.4
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.3e-108 397.1 318 64.5
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.2e-108 396.4 313 63.6
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 2.8e-108 396.0 321 62.0
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 2.8e-108 396.0 326 68.4
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 4.8e-108 395.2 313 63.3
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.4e-107 392.9 315 63.5
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 7.0e-107 391.3 296 67.6
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.2e-106 390.6 311 63.0
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 4.5e-106 388.7 317 63.1
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.9e-106 388.3 288 69.1
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 5.0e-105 385.2 297 67.7
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 1.9e-104 383.3 345 60.0
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 2.5e-104 382.9 312 63.5
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.2e-103 380.6 326 61.0
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 8.0e-103 377.9 322 60.9
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 3.0e-102 375.9 215 82.8
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 8.8e-102 374.4 324 60.2
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.0e-101 373.2 334 61.1
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.3e-100 370.5 320 60.6
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.8e-99 366.7 294 64.6
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 3.5e-98 362.5 330 60.3
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 4.5e-98 362.1 329 58.7
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 4.2e-96 355.5 316 60.4
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 9.5e-96 354.4 297 64.3
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.0e-94 350.9 217 77.0
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.0e-93 346.7 278 64.4
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 2.0e-93 346.7 308 58.1
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 5.7e-93 345.1 319 56.1
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 2.8e-92 342.8 202 80.7
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.9e-92 342.0 278 64.4
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 3.9e-89 332.4 209 74.6
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.1e-88 330.9 326 56.4
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.4e-83 313.9 270 61.9
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.9e-83 313.5 295 55.9
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 7.0e-83 311.6 237 65.8
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 6.0e-82 308.5 236 63.6
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.3e-81 307.4 235 64.7
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.1e-80 304.3 229 67.2
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 5.8e-77 292.0 330 47.3
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.7e-76 290.4 262 60.3
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 9.2e-75 284.6 161 82.6
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 6.0e-74 282.0 235 64.3
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 1.8e-70 270.4 294 52.4
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 6.8e-70 268.5 266 61.3
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 1.4e-67 260.8 172 70.3
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 2.1e-66 256.9 217 57.6
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 6.6e-65 251.9 222 55.9
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.9e-64 250.4 208 61.5
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 5.6e-64 248.8 197 65.0
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 3.2e-59 233.0 247 53.0
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.7e-57 227.3 215 56.7
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 8.1e-55 218.4 227 56.8
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 8.1e-55 218.4 213 54.0
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 8.1e-55 218.4 213 54.0
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.5e-53 214.2 220 49.5
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 5.8e-53 212.2 132 75.0
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 4.2e-51 206.1 129 77.5
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 2.3e-49 200.3 229 49.8
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 3.0e-49 199.9 188 59.6
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 3.6e-47 193.0 223 49.8
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 4.0e-46 189.5 185 56.2
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 9.0e-46 188.3 116 75.9
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 4.3e-40 169.5 150 53.3
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.3e-39 167.9 241 43.2
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.8e-39 166.0 217 39.2
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 8.1e-39 165.2 160 53.8
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 9.0e-38 161.8 214 43.0
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.4e-37 159.8 110 68.2
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 5.8e-37 159.1 135 60.7
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.9e-35 154.1 121 68.6
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 1.0e-33 148.3 82 86.6
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 7.4e-32 142.1 314 32.8
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 5.8e-29 132.5 94 67.0
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 5.8e-29 132.5 94 67.0
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.3e-28 131.3 94 67.0
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 6.5e-28 129.0 280 37.5
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 9.3e-27 125.2 82 70.7
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 2.1e-26 124.0 185 43.8
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.9e-25 119.8 96 61.5
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 1.1e-24 118.2 324 29.6
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 4.8e-23 112.8 96 56.2
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 8.2e-23 112.1 70 65.7
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.8e-22 110.9 65 66.2
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 4.1e-22 109.8 68 64.7
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 7.7e-21 105.5 111 46.8
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 1.3e-20 104.8 63 66.7
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 1.3e-20 104.8 63 66.7
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 8.5e-20 102.1 65 60.0
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.4e-19 101.3 62 66.1
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 9.4e-19 98.6 68 60.3
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 9.4e-19 98.6 68 60.3
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.7e-18 97.1 72 72.2
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 7.9e-18 95.5 66 59.1
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 7.9e-18 95.5 66 59.1
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.4e-17 94.7 79 58.2
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.3e-17 94.0 174 41.4
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 1.4e-14 84.7 110 37.3
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 6.9e-14 82.4 108 43.5
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 1.4e-11 74.7 81 53.1
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 3.0e-09 67.0 78 52.6
EL10Ac2g03558 Beta vulgaris HOM05D003601 ORTHO05D004896 5.7e-08 62.8 68 51.5
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 3.7e-07 60.1 70 45.7
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 6.3e-07 59.3 71 49.3
Eucgr.A02113 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.8e-06 57.8 54 53.7
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 5.3e-06 56.2 42 73.8


User provided reference genes

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