Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 4.0e-295 1017.3 505 100.0
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.6e-275 952.2 523 92.4
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.7e-245 852.4 502 83.7
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 1.9e-244 849.0 504 83.3
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 1.2e-243 846.3 459 91.9
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 8.0e-243 843.6 503 82.9
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.4e-242 842.8 502 83.5
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.8e-242 842.4 509 82.7
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.3e-242 842.0 503 82.7
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.0e-242 841.3 503 82.7
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 6.8e-242 840.5 502 83.1
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.5e-241 839.3 505 81.8
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.9e-240 835.1 504 82.3
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.9e-240 835.1 504 82.3
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 3.7e-240 834.7 503 82.9
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 4.9e-240 834.3 510 82.4
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 4.1e-239 831.2 502 82.7
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 7.0e-239 830.5 500 83.0
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.2e-238 829.7 506 81.4
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 7.8e-238 827.0 509 82.1
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 7.8e-238 827.0 504 81.5
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 2.3e-237 825.5 502 81.5
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.9e-237 824.7 509 80.4
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 8.6e-237 823.5 502 81.7
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.9e-236 822.4 509 81.7
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.8e-235 818.5 509 81.3
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 4.0e-234 814.7 499 81.6
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 6.8e-234 813.9 501 80.6
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 4.4e-233 811.2 484 82.9
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.4e-231 806.2 511 79.3
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 2.4e-231 805.4 530 77.5
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 9.2e-231 803.5 507 79.7
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 4.6e-230 801.2 507 78.9
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 6.0e-230 800.8 505 77.8
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.3e-229 798.9 526 76.4
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.1e-228 796.6 510 78.0
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.9e-228 795.8 504 79.2
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.5e-228 795.4 510 78.6
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 3.3e-228 795.0 503 79.1
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 7.3e-228 793.9 494 81.2
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 9.5e-228 793.5 481 81.3
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 5.2e-226 787.7 495 80.6
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 8.9e-226 786.9 506 77.7
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 2.0e-225 785.8 513 78.6
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 4.4e-225 784.6 508 76.6
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.3e-224 783.1 512 77.7
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 1.7e-224 782.7 511 77.7
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 3.7e-224 781.6 501 77.6
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 4.9e-224 781.2 512 78.1
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 1.9e-223 779.2 507 78.1
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.9e-223 779.2 507 78.3
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.2e-222 776.5 512 77.7
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.6e-222 776.2 504 78.0
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 2.7e-222 775.4 513 76.8
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.3e-221 773.1 505 76.2
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.5e-220 769.6 460 83.7
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 1.5e-220 769.6 542 72.3
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.9e-220 769.2 488 78.3
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.9e-220 769.2 498 77.5
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.5e-220 768.8 501 77.8
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.6e-219 766.1 502 76.7
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 2.1e-219 765.8 499 78.0
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 4.7e-219 764.6 508 76.4
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.8e-218 762.7 501 75.6
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 8.9e-218 760.4 508 76.2
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 1.5e-217 759.6 541 73.0
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 3.4e-217 758.4 501 75.4
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 9.9e-217 756.9 503 75.3
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 4.9e-216 754.6 509 74.9
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.9e-215 752.7 513 76.6
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 5.4e-215 751.1 514 74.9
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 3.5e-214 748.4 515 75.1
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 4.6e-214 748.0 502 74.3
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 2.3e-213 745.7 431 85.4
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 6.6e-213 744.2 477 77.4
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 2.5e-212 742.3 510 74.3
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 4.3e-212 741.5 509 73.3
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 2.1e-211 739.2 502 74.7
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.8e-211 738.8 487 75.2
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 8.1e-211 737.3 509 73.5
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.6e-209 732.3 503 74.6
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.6e-209 732.3 503 74.6
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.7e-208 729.6 590 66.6
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 4.6e-206 721.5 524 71.4
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 7.8e-206 720.7 497 72.8
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 8.1e-203 710.7 500 74.4
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 5.3e-202 708.0 504 74.6
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 6.4e-200 701.0 503 71.6
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.9e-197 691.8 511 70.1
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 5.6e-196 688.0 462 75.3
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 5.6e-196 688.0 518 68.9
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 9.6e-196 687.2 462 75.3
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 9.6e-196 687.2 507 70.4
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 9.9e-193 677.2 415 82.2
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.6e-190 669.8 510 68.4
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 1.0e-184 650.6 520 66.5
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 9.3e-183 644.0 431 75.9
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 4.6e-182 641.7 465 71.6
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 7.9e-182 641.0 518 64.7
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.7e-176 623.2 492 63.6
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 5.1e-173 611.7 379 81.5
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.0e-168 597.4 482 64.3
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 3.2e-167 592.4 506 60.1
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 4.2e-167 592.0 365 83.6
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 7.9e-166 587.8 480 64.4
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.9e-165 585.5 482 63.9
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 5.1e-165 585.1 363 83.2
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 1.0e-160 570.9 455 67.0
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 1.7e-160 570.1 360 81.4
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 7.9e-158 561.2 365 77.5
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.8e-154 550.1 334 82.3
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 7.0e-154 548.1 392 71.9
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.0e-153 546.6 494 57.7
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.0e-152 544.3 475 61.3
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 5.0e-152 542.0 479 59.7
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.7e-144 516.9 524 54.6
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.2e-140 504.2 489 55.4
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 6.3e-139 498.4 289 83.0
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 3.8e-136 489.2 337 76.3
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 1.2e-134 484.2 356 72.5
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 4.0e-133 479.2 487 52.8
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 4.4e-132 475.7 511 51.3
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 8.0e-126 454.9 423 60.0
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.1e-114 416.0 319 69.3
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-109 401.0 470 51.7
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.0e-108 397.1 365 62.7
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.1e-106 391.3 515 44.3
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.5e-95 354.4 291 64.9
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.9e-87 327.4 317 59.0
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 4.6e-81 306.2 232 67.2
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.0e-76 290.8 157 85.4
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.2e-75 287.3 245 60.4
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.9e-72 276.6 191 68.6
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 1.0e-67 261.9 397 39.3
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 8.7e-64 248.8 141 82.3
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 5.7e-63 246.1 216 65.7
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 2.4e-61 240.7 141 78.7
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.7e-59 234.6 306 41.8
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.9e-59 233.8 139 78.4
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 2.5e-55 220.7 341 41.6
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 7.2e-42 176.0 164 56.7
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.1e-37 162.2 106 70.8
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.2e-36 158.7 100 74.0
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.8e-35 153.7 193 50.8
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.2e-31 142.1 117 68.4
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 6.5e-27 126.3 334 29.3
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.8e-24 118.2 68 80.9
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.7e-19 101.7 437 25.6
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 8.8e-16 89.4 61 73.8
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 3.7e-14 84.0 72 61.1
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.4e-13 80.1 96 52.1
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.2e-09 68.9 85 49.4
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.7e-09 67.0 46 63.0
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 1.0e-08 65.9 38 81.6
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.0e-08 64.3 38 71.1
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 2.2e-06 58.2 33 81.8


User provided reference genes

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