Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 3748.4 1929 100.0
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 3496.4 2088 88.2
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2903.2 1974 79.1
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2901.7 1986 78.3
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2562.7 2016 68.8
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2545.0 1983 70.0
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2520.3 1989 68.8
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2515.7 1978 68.2
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2511.5 1997 67.9
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2507.2 1962 69.4
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2500.3 1971 68.7
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2467.6 1999 66.2
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2466.4 1963 67.9
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2464.9 1962 67.0
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2458.7 1962 66.8
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2456.4 1962 66.7
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2445.2 1956 68.1
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2403.6 1955 67.1
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2396.7 1960 67.0
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2390.5 1953 66.9
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2379.0 1938 66.8
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2366.3 1966 65.8
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2364.7 1964 65.7
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2354.7 1965 66.1
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2323.1 1968 65.2
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2318.1 2007 63.3
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 2295.0 1970 64.0
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2288.8 1996 62.7
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2285.8 1960 63.9
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2277.3 1943 63.6
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2267.7 1940 63.2
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 2260.0 1945 64.0
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2256.5 1948 62.8
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2244.5 1550 73.0
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2243.8 1963 62.3
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 2243.4 1624 71.6
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 2236.8 2005 62.4
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2228.4 1949 63.3
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2223.0 1985 61.6
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2218.0 1970 62.4
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 2209.1 1983 61.4
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2208.7 1546 72.0
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 2206.8 1980 61.0
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2202.9 1949 62.5
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 2197.9 1961 62.3
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 2197.2 1994 60.5
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2183.7 1975 61.1
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2181.0 1882 63.4
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 2149.4 1981 59.8
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 2123.2 1962 60.3
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 2085.1 2063 57.9
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 2083.9 1976 58.8
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 2076.2 1991 58.3
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 2069.3 2103 56.4
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 2061.2 2119 57.7
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 2042.7 1966 58.4
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 2025.0 1472 69.6
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 2024.2 1978 57.5
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 2024.2 1990 56.3
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 2013.4 1696 65.6
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 2012.3 1977 57.2
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 2010.0 1996 56.2
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 2008.0 2012 56.7
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 2005.3 1957 58.2
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 2004.6 1963 57.6
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1987.6 2002 57.0
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1986.8 2002 56.5
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1977.6 1825 58.2
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1974.1 1823 58.1
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1972.6 1843 57.9
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1972.6 1958 56.1
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1967.2 1949 56.2
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1964.9 1816 58.6
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1961.4 1338 74.0
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1960.7 1817 58.7
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1960.3 1964 57.2
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1943.3 2061 55.4
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1930.2 1996 55.3
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1924.8 1854 57.0
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1912.9 1857 57.0
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1904.8 1853 56.4
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1846.6 1963 53.6
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1830.1 1212 79.6
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1818.1 1947 53.5
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1799.3 1978 52.4
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1793.5 1942 52.9
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1791.9 1966 52.9
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1786.2 1243 73.2
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1784.6 1852 53.7
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1768.8 1891 52.9
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1764.2 1993 51.3
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1763.8 1859 55.0
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1763.8 1859 55.0
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1760.3 1963 52.6
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1752.3 1968 53.2
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1748.4 1769 55.2
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1714.9 1476 60.2
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1713.0 1947 51.5
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1673.7 1879 50.9
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1646.7 1972 49.0
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1153.7 1129 59.1
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1147.1 1987 37.9
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 0.0e+00 1116.3 974 61.2
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 0.0e+00 1114.0 1842 39.0
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 0.0e+00 1090.1 1962 38.6
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1088.2 895 63.7
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 0.0e+00 1080.5 1716 39.7
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 1.2e-307 1060.8 1830 39.8
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.1e-305 1054.3 2011 36.5
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 5.7e-289 998.8 1159 51.2
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 4.8e-288 995.7 1103 55.5
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 8.5e-285 984.9 987 59.6
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 9.5e-260 901.7 1104 49.5
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.2e-256 890.6 1127 46.7
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.5e-233 814.7 1460 37.1
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 2.3e-221 774.2 1775 31.7
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 4.6e-214 750.0 581 67.0
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 1.1e-210 738.8 470 82.8
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 5.1e-205 719.9 541 69.7
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 7.1e-199 699.5 1164 39.3
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.4e-156 557.8 662 48.5
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 1.4e-149 535.8 821 42.6
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.1e-146 526.2 572 51.2
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.0e-141 509.6 561 48.7
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.4e-141 509.2 746 47.5
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.5e-140 505.8 545 51.6
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 4.5e-100 371.3 286 65.7
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.4e-85 322.4 378 49.2
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 7.6e-76 290.8 471 41.4
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.1e-63 250.4 380 40.8
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 3.4e-60 238.8 722 33.1
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-56 226.9 254 49.2
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 4.5e-52 211.8 509 32.2
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 4.7e-49 201.8 181 59.1
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.4e-48 200.3 567 34.7
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.5e-47 196.8 135 69.6
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 6.3e-46 191.4 348 37.1
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.7e-44 186.0 227 43.6
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 4.8e-38 165.2 164 51.2
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.4e-37 163.7 1223 20.8
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 7.7e-36 157.9 163 50.9
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 3.3e-34 152.5 164 47.0
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.8e-32 146.7 113 65.5
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 2.4e-29 136.3 116 59.5
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 5.4e-29 135.2 372 30.9
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 2.0e-28 133.3 79 74.7
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 4.5e-28 132.1 227 41.0
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 2.3e-27 129.8 94 70.2
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 2.9e-27 129.4 85 78.8
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 7.3e-26 124.8 1047 21.6
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 5.8e-23 115.2 151 47.7
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 7.5e-23 114.8 141 51.8
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 6.2e-17 95.1 201 33.3
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 3.1e-16 92.8 141 44.0
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.2e-14 86.7 56 69.6
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 2.9e-14 86.3 56 73.2
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 8.3e-14 84.7 145 37.2
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 3.5e-12 79.3 73 57.5
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 5.1e-11 75.5 184 41.3
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 8.6e-11 74.7 70 54.3
FvH4_7g01070 Fragaria vesca HOM05D011336 ORTHO05D017014 2.8e-09 69.7 155 42.6
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 6.2e-09 68.6 59 61.0
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.4e-08 67.4 112 37.5
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 8.9e-08 64.7 144 41.0
Phvul.002G075100 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 4.9e-06 58.9 164 37.2
Psat1g112240 Pisum sativum HOM05D004392 ORTHO05D029174 4.9e-06 58.9 62 48.4


User provided reference genes

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