Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 1.5e-53 213.0 138 100.0
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 5.2e-43 177.9 124 96.8
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 1.4e-40 169.9 136 81.6
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.2e-34 150.2 127 79.5
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 1.2e-34 150.2 127 80.3
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 3.4e-34 148.7 129 76.0
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 4.4e-34 148.3 127 79.5
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 4.4e-34 148.3 133 73.7
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 5.7e-34 147.9 127 78.7
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 2.2e-33 146.0 131 75.6
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.9e-33 144.8 129 76.7
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.9e-33 144.8 129 76.7
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.9e-33 144.8 129 75.2
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 1.8e-32 142.9 127 78.0
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 1.8e-32 142.9 129 73.6
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 2.4e-32 142.5 128 76.6
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 3.1e-32 142.1 127 77.2
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 3.1e-32 142.1 129 59.7
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 5.4e-32 141.4 126 67.5
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 5.4e-32 141.4 127 76.4
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 1.6e-31 139.8 127 64.6
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 2.7e-31 139.0 128 72.7
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 3.5e-31 138.7 131 77.1
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 4.5e-31 138.3 129 72.1
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 5.9e-31 137.9 137 72.3
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 7.7e-31 137.5 135 52.6
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 7.7e-31 137.5 136 73.5
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 1.0e-30 137.1 137 71.5
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 1.3e-30 136.7 123 77.2
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 3.8e-30 135.2 126 72.2
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 5.0e-30 134.8 137 70.1
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 6.6e-30 134.4 129 74.4
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 6.6e-30 134.4 133 71.4
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 8.6e-30 134.0 132 72.7
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 8.6e-30 134.0 127 76.4
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 8.6e-30 134.0 127 61.4
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 8.6e-30 134.0 129 71.3
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 1.1e-29 133.7 137 71.5
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 1.1e-29 133.7 129 75.2
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.5e-29 132.5 137 68.6
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 4.2e-29 131.7 133 69.2
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 4.2e-29 131.7 133 69.2
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 7.2e-29 131.0 124 75.8
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 7.2e-29 131.0 132 68.2
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 7.2e-29 131.0 137 68.6
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 9.5e-29 130.6 135 68.9
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 9.5e-29 130.6 135 68.9
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 1.2e-28 130.2 132 59.1
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 1.2e-28 130.2 131 67.2
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.6e-28 129.8 137 68.6
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 2.1e-28 129.4 132 67.4
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 2.8e-28 129.0 135 68.1
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 2.8e-28 129.0 129 69.0
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.6e-28 128.6 137 70.1
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 3.6e-28 128.6 83 68.7
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 3.6e-28 128.6 129 66.7
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 3.6e-28 128.6 132 66.7
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 4.7e-28 128.3 129 66.7
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 8.0e-28 127.5 129 65.9
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 8.0e-28 127.5 129 70.5
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 1.0e-27 127.1 129 68.2
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 1.0e-27 127.1 129 69.0
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 1.0e-27 127.1 135 65.2
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 1.0e-27 127.1 135 68.1
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 1.0e-27 127.1 135 67.4
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.4e-27 126.7 121 74.4
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.4e-27 126.7 126 69.8
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 1.4e-27 126.7 131 67.2
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 1.4e-27 126.7 128 70.3
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 1.8e-27 126.3 129 65.9
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.8e-27 126.3 137 68.6
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 2.3e-27 125.9 131 64.1
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 3.0e-27 125.6 129 67.4
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 4.0e-27 125.2 79 72.2
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 5.2e-27 124.8 132 64.4
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 8.9e-27 124.0 128 70.3
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 1.2e-26 123.6 116 72.4
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 1.5e-26 123.2 130 63.1
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 1.5e-26 123.2 79 69.6
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 5.7e-26 121.3 129 65.9
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 7.5e-26 120.9 131 65.6
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 7.5e-26 120.9 129 68.2
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 7.5e-26 120.9 128 60.9
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 9.8e-26 120.6 112 76.8
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 2.2e-25 119.4 129 60.5
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 2.9e-25 119.0 80 67.5
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 1.1e-24 117.1 125 68.8
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 5.4e-24 114.8 129 64.3
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.3e-22 110.2 132 61.4
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 1.7e-22 109.8 126 64.3
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 1.7e-22 109.8 130 62.3
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 1.7e-22 109.8 130 62.3
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 2.3e-22 109.4 121 44.6
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 2.3e-22 109.4 138 58.7
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 2.9e-22 109.0 132 39.4
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 3.9e-22 108.6 130 61.5
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 6.6e-22 107.8 78 59.0
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 1.5e-21 106.7 129 53.5
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.2e-20 103.6 130 59.2
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 6.1e-20 101.3 72 59.7
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 1.0e-19 100.5 108 46.3
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.0e-19 100.5 104 76.9
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 1.8e-19 99.8 134 57.5
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 2.3e-19 99.4 139 35.3
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 4.0e-19 98.6 124 60.5
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 4.0e-19 98.6 124 60.5
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 5.2e-19 98.2 124 54.8
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 5.2e-19 98.2 129 56.6
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 6.8e-19 97.8 131 54.2
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 7.5e-18 94.4 95 68.4
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 1.3e-17 93.6 138 42.0
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.7e-17 93.2 95 75.8
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 1.9e-16 89.7 116 60.3
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 3.2e-16 89.0 119 51.3
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 4.1e-16 88.6 128 53.9
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 1.6e-12 76.6 60 56.7
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 6.2e-12 74.7 121 32.2
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 6.2e-12 74.7 121 32.2
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.8e-11 73.2 59 57.6
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 2.3e-11 72.8 121 31.4
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 2.3e-11 72.8 121 31.4
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 2.3e-11 72.8 121 31.4
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 6.8e-11 71.2 122 48.4
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 6.8e-11 71.2 94 41.5
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 2.6e-10 69.3 119 29.4
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 4.4e-10 68.6 99 32.3
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.3e-09 67.0 93 53.8
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 4.9e-09 65.1 120 29.2
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 7.8e-07 57.8 127 41.7
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 3.0e-06 55.8 73 38.4


User provided reference genes

Program Settings