Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 0.0e+00 1324.7 659 100.0
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 0.0e+00 1273.1 672 94.9
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 0.0e+00 1117.4 651 85.1
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 7.6e-294 1013.4 917 60.3
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 5.0e-285 984.2 660 74.4
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 8.8e-282 973.4 666 73.0
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 2.8e-280 968.4 661 75.6
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 1.4e-279 966.1 662 73.4
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 2.6e-278 961.8 662 74.5
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 4.5e-278 961.1 666 73.6
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 3.8e-277 958.0 662 74.5
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 1.4e-276 956.1 660 73.8
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 9.4e-276 953.4 664 74.1
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.1e-275 952.2 660 73.8
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 3.6e-275 951.4 659 73.4
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 3.1e-271 938.3 661 71.0
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 5.3e-271 937.6 663 72.1
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 2.0e-270 935.6 668 71.6
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 1.9e-268 929.1 666 70.3
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 8.0e-267 923.7 661 70.2
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.0e-266 923.3 666 71.5
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 1.1e-265 919.8 658 70.8
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 9.7e-265 916.8 672 69.2
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.4e-263 912.9 636 73.3
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 3.1e-263 911.8 672 68.9
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 8.2e-256 887.1 666 68.3
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 5.3e-255 884.4 661 69.4
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 5.3e-255 884.4 664 69.4
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 2.7e-254 882.1 662 69.8
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 8.5e-253 877.1 664 69.0
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.5e-252 876.3 680 67.1
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.5e-252 876.3 680 67.1
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 4.7e-251 871.3 661 67.9
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 4.0e-250 868.2 662 67.7
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 4.0e-250 868.2 666 67.1
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 7.5e-249 864.0 663 68.0
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 1.3e-248 863.2 668 67.8
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.7e-248 862.8 632 69.5
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 1.1e-247 860.1 661 67.8
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 3.1e-247 858.6 659 66.3
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 2.0e-246 855.9 666 66.7
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 3.5e-246 855.1 661 66.1
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 4.5e-246 854.7 760 61.6
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 1.3e-245 853.2 666 66.4
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 3.8e-245 851.7 659 66.6
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 4.7e-243 844.7 670 64.8
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 8.9e-242 840.5 667 65.7
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 1.2e-241 840.1 668 65.7
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 1.5e-241 839.7 669 64.1
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 4.4e-241 838.2 687 65.1
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 7.5e-241 837.4 673 65.8
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.7e-240 836.3 673 64.9
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 1.7e-240 836.3 659 65.4
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.2e-240 835.9 672 64.4
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 2.2e-240 835.9 668 65.4
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 2.8e-240 835.5 668 65.6
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 1.8e-239 832.8 668 65.0
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.2e-238 830.1 676 64.3
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 1.6e-238 829.7 664 65.2
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 1.9e-236 822.8 664 64.6
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 2.5e-236 822.4 664 64.6
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 1.6e-235 819.7 658 64.6
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 8.0e-235 817.4 658 64.0
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 3.4e-233 812.0 658 63.8
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 2.2e-232 809.3 668 63.5
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 6.0e-230 801.2 640 65.2
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 4.0e-226 788.5 586 69.3
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 5.8e-225 784.6 668 62.3
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 9.8e-225 783.9 667 62.1
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 1.1e-223 780.4 648 63.4
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 2.4e-223 779.2 660 62.0
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 1.2e-222 776.9 656 62.3
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 7.8e-222 774.2 669 62.9
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 3.0e-221 772.3 659 60.8
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 6.6e-221 771.2 634 62.9
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 1.5e-220 770.0 665 62.1
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 1.5e-220 770.0 660 60.8
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 5.6e-220 768.1 659 60.8
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 7.3e-220 767.7 661 60.8
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 9.5e-220 767.3 661 60.8
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 1.2e-219 766.9 659 60.5
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 2.3e-218 762.7 666 60.8
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 6.8e-218 761.1 662 60.4
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 3.4e-217 758.8 662 60.9
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 1.4e-215 753.4 675 61.2
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 1.3e-213 746.9 661 59.3
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 2.3e-213 746.1 651 59.6
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 3.9e-213 745.3 744 54.7
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 2.1e-211 739.6 665 60.0
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 2.8e-211 739.2 650 58.9
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 8.1e-211 737.6 654 58.3
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 1.7e-205 719.9 651 57.8
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 1.7e-205 719.9 677 58.9
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 9.6e-204 714.1 682 60.7
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 8.7e-197 691.0 667 54.4
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 1.4e-194 683.7 618 57.8
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 2.9e-192 676.0 669 54.1
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 1.1e-180 637.5 492 65.7
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 1.3e-179 634.0 664 52.1
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 3.2e-167 592.8 660 48.6
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 3.6e-166 589.3 560 56.6
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 3.4e-161 572.8 715 44.9
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 3.8e-160 569.3 524 57.1
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 3.5e-145 519.6 654 45.1
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 7.2e-135 485.3 542 49.4
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 2.2e-115 420.6 296 72.3
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 1.6e-102 377.9 419 51.6
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 4.3e-95 353.2 717 35.1
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 2.8e-94 350.5 536 42.4
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.5e-87 328.2 663 35.0
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 7.3e-87 325.9 647 31.7
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 4.9e-67 260.0 164 81.1
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 1.5e-55 221.9 468 33.8
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.6e-54 218.4 357 41.2
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 3.9e-48 197.2 135 74.1
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 2.1e-41 174.9 150 58.7
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 5.7e-39 166.8 136 66.2
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 2.2e-30 138.3 100 73.0
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 2.8e-30 137.9 175 53.1
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 2.4e-29 134.8 347 30.8
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 7.5e-23 113.2 164 40.9
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 2.2e-19 101.7 58 77.6
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.0e-16 92.8 83 59.0
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 1.4e-16 92.4 88 53.4
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 1.6e-12 79.0 66 62.1
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 2.0e-12 78.6 61 63.9
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 1.0e-11 76.3 51 70.6
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.8e-08 65.5 37 86.5
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 8.9e-08 63.2 37 83.8
AUR62041250 Chenopodium quinoa HOM05D005966 ORTHO05D007584 3.4e-07 61.2 50 64.0


User provided reference genes

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