Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 2.2e-221 771.9 379 100.0
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 4.2e-180 634.8 373 85.5
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 2.3e-173 612.5 377 79.0
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 2.8e-171 605.5 382 78.5
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 1.8e-162 576.2 379 77.6
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 2.4e-151 539.3 339 77.0
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 2.4e-151 539.3 365 73.4
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 2.1e-147 526.2 371 70.1
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 4.7e-147 525.0 378 69.0
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 5.2e-146 521.5 381 68.2
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 4.9e-144 515.0 373 69.4
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 1.4e-143 513.5 381 68.2
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 1.9e-143 513.1 351 71.5
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 1.6e-142 510.0 378 68.0
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 3.5e-142 508.8 378 67.2
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 4.6e-142 508.4 351 71.2
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 7.8e-142 507.7 382 67.0
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.3e-141 506.9 339 72.9
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.3e-141 506.1 360 69.2
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 2.3e-141 506.1 344 72.1
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 3.0e-141 505.8 367 70.0
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 6.6e-141 504.6 349 67.9
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.1e-140 503.8 337 73.0
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 5.6e-140 501.5 356 70.8
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 9.6e-140 500.7 366 69.4
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 1.2e-139 500.4 369 66.7
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.1e-139 499.6 373 67.0
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.1e-139 499.6 373 67.0
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.8e-139 499.2 375 66.7
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 6.2e-139 498.0 364 67.3
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 6.2e-139 498.0 381 64.6
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 6.2e-139 498.0 365 70.1
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 1.1e-138 497.3 360 68.3
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 3.1e-138 495.7 370 67.0
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 5.2e-138 495.0 369 66.1
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 6.9e-138 494.6 377 65.0
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 1.5e-137 493.4 377 64.7
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 5.8e-137 491.5 390 63.3
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 2.2e-136 489.6 365 69.3
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 3.8e-136 488.8 377 64.2
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 1.4e-135 486.9 376 64.9
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 1.9e-135 486.5 386 63.0
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 3.2e-135 485.7 327 70.0
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 4.2e-135 485.3 382 67.3
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 4.2e-135 485.3 327 69.7
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 5.4e-135 485.0 376 67.3
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 1.2e-134 483.8 332 68.7
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 1.6e-134 483.4 350 66.6
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 3.5e-134 482.3 327 71.3
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 7.8e-134 481.1 368 64.1
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 7.8e-134 481.1 408 61.3
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 1.3e-133 480.3 399 61.4
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 3.0e-133 479.2 388 63.1
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 3.9e-133 478.8 384 63.0
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 1.5e-132 476.9 386 64.0
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 1.5e-132 476.9 326 68.7
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 1.9e-132 476.5 348 66.1
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 3.3e-132 475.7 388 64.2
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 3.3e-132 475.7 356 66.3
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 7.3e-132 474.6 383 64.8
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 3.6e-131 472.2 350 66.6
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 4.8e-131 471.9 359 64.9
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 2.4e-130 469.5 340 68.5
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 2.4e-130 469.5 342 67.0
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.4e-130 469.5 326 69.0
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 3.1e-130 469.2 325 67.1
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 1.5e-129 466.8 366 63.1
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 1.3e-128 463.8 365 66.6
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.2e-128 463.0 326 68.1
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 4.9e-128 461.8 324 67.3
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 2.1e-126 456.4 378 62.7
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 2.7e-126 456.1 339 66.7
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 3.5e-126 455.7 358 62.3
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 7.9e-126 454.5 388 60.8
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 1.0e-125 454.1 384 60.7
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 1.0e-125 454.1 353 65.7
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 2.3e-125 453.0 331 66.5
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 6.7e-125 451.4 356 64.3
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 7.4e-124 448.0 356 63.2
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 7.4e-124 448.0 353 64.6
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 7.4e-124 448.0 348 60.9
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 5.3e-122 441.8 342 61.4
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 1.2e-121 440.7 299 71.9
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 3.4e-121 439.1 343 63.6
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 4.5e-121 438.7 365 59.2
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 1.3e-120 437.2 279 71.7
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 2.9e-120 436.0 329 66.9
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 4.9e-120 435.3 363 59.8
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 1.1e-119 434.1 341 62.2
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 3.2e-119 432.6 355 61.7
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 3.2e-119 432.6 324 63.6
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 5.5e-119 431.8 278 74.5
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 5.5e-119 431.8 344 63.7
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 8.7e-117 424.5 272 72.4
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 4.3e-116 422.2 333 64.6
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 4.8e-115 418.7 279 71.3
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.8e-114 416.8 348 58.3
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 9.0e-114 414.5 342 63.2
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 1.2e-113 414.1 357 61.3
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 2.5e-111 406.4 345 62.3
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 1.8e-106 390.2 378 55.0
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 1.8e-106 390.2 350 59.7
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 8.5e-104 381.3 327 59.9
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 4.2e-103 379.0 309 62.5
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 5.1e-101 372.1 287 64.1
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.7e-96 357.1 299 57.5
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 1.9e-95 353.6 357 52.4
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 1.8e-93 347.1 305 55.1
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 8.8e-93 344.7 268 66.4
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 2.4e-90 336.7 330 54.8
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 1.3e-88 330.9 290 54.8
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 5.7e-76 288.9 299 49.2
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 3.5e-73 279.6 221 61.1
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 9.4e-71 271.6 260 54.6
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 3.7e-67 259.6 214 59.3
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 2.4e-66 256.9 295 43.1
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.2e-62 244.6 285 40.4
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 6.8e-61 238.8 289 45.0
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 4.7e-54 216.1 294 41.5
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 5.0e-48 196.1 129 72.1
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 5.6e-39 166.0 146 52.7
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 4.3e-31 139.8 90 70.0
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 2.6e-28 130.6 85 69.4
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 2.9e-27 127.1 199 36.7
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 3.6e-22 110.2 69 69.6
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 4.0e-13 80.1 61 57.4
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.3e-08 65.1 63 54.0
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 1.3e-08 65.1 42 66.7
SEGI_03040 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.5e-07 61.6 71 42.3


User provided reference genes

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