Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003249 Carpinus fangiana HOM05D006226 ORTHO05D007738 0.0e+00 1405.6 699 100.0
QL02p040023 Quercus lobata HOM05D006226 ORTHO05D007738 0.0e+00 1086.2 713 76.6
CiPaw.03G218400 Carya illinoinensis HOM05D006226 ORTHO05D007738 1.4e-311 1072.4 705 76.6
GSVIVG01015381001 Vitis vinifera HOM05D006226 ORTHO05D007738 2.8e-254 882.1 699 66.4
Ciclev10007624m.g Citrus clementina HOM05D006226 ORTHO05D007738 6.5e-251 870.9 701 65.8
Manes.16G114900 Manihot esculenta HOM05D006226 ORTHO05D007738 3.0e-240 835.5 704 62.9
CANSAT56G2062 Cannabis sativa HOM05D006226 ORTHO05D007738 4.8e-238 828.2 657 64.5
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 8.2e-238 827.4 696 62.6
FvH4_1g04570 Fragaria vesca HOM05D006226 ORTHO05D007738 1.8e-237 826.2 701 62.1
Prupe.7G232400 Prunus persica HOM05D006226 ORTHO05D007738 2.4e-237 825.9 702 62.5
FAN19G1825 Fragaria x ananassa HOM05D006226 ORTHO05D007738 1.6e-236 823.2 701 61.9
RcHm_v2.0_Chr2g0090271 Rosa chinensis HOM05D006226 ORTHO05D007738 4.5e-236 821.6 701 62.3
FAN26G0472 Fragaria x ananassa HOM05D006226 ORTHO05D007738 1.0e-235 820.5 701 61.5
MD15G1183800 Malus domestica HOM05D006226 ORTHO05D007738 1.1e-234 817.0 704 61.5
FAN23G2910 Fragaria x ananassa HOM05D006226 ORTHO05D007738 1.9e-234 816.2 701 61.5
Dinv36642 Davidia involucrata HOM05D006226 ORTHO05D007738 3.2e-234 815.5 617 68.1
Sabra18G0068600 Salix brachista HOM05D006226 ORTHO05D007738 2.7e-233 812.4 705 62.1
ClCG06G008620 Citrullus lanatus HOM05D006226 ORTHO05D007738 5.7e-231 804.7 709 59.0
Lj2g0027193 Lotus japonicus HOM05D006226 ORTHO05D007738 9.7e-231 803.9 714 60.2
Rhsim01G0096900 Rhododendron simsii HOM05D006226 ORTHO05D007738 4.8e-230 801.6 711 61.3
COL.COLO4_34848 Corchorus olitorius HOM05D006226 ORTHO05D007738 1.4e-229 800.0 687 60.4
arahy.Tifrunner.gnm1.ann1.ZKYF3I Arachis hypogaea HOM05D006226 ORTHO05D007738 7.0e-229 797.7 704 60.2
arahy.Tifrunner.gnm1.ann1.9IQ1SY Arachis hypogaea HOM05D006226 ORTHO05D007738 1.2e-228 797.0 704 60.1
Psat1g043440 Pisum sativum HOM05D006226 ORTHO05D007738 4.5e-228 795.0 710 59.2
Potri.018G081500 Populus trichocarpa HOM05D006226 ORTHO05D007738 7.7e-228 794.3 709 60.5
Glyma.07G085400 Glycine max HOM05D006226 ORTHO05D007738 1.3e-227 793.5 717 59.8
MELO3C024624.2 Cucumis melo HOM05D006226 ORTHO05D007738 6.1e-225 784.6 707 57.3
Phvul.004G164600 Phaseolus vulgaris HOM05D006226 ORTHO05D007738 1.4e-224 783.5 645 62.8
Medtr6g087530 Medicago truncatula HOM05D006226 ORTHO05D007738 5.2e-224 781.6 713 58.2
Lj7C652G7 Lonicera japonica HOM05D006226 ORTHO05D007738 1.5e-223 780.0 651 63.0
Glyma.09G191500 Glycine max HOM05D006226 ORTHO05D007738 2.2e-222 776.2 709 59.4
TPR.G10046 Trifolium pratense HOM05D006226 ORTHO05D007738 2.8e-222 775.8 648 61.6
Gorai.009G025300 Gossypium raimondii HOM05D006226 ORTHO05D007738 4.5e-220 768.5 706 57.8
vmacro20706 Vaccinium macrocarpon HOM05D006226 ORTHO05D007738 8.6e-219 764.2 788 54.6
Sed0016798 Sechium edule HOM05D006226 ORTHO05D007738 2.5e-218 762.7 691 58.3
VMungo0464G1421 Vigna mungo HOM05D006226 ORTHO05D007738 3.4e-215 752.3 708 57.5
Eucgr.C01033 Eucalyptus grandis HOM05D006226 ORTHO05D007738 9.2e-213 744.2 635 59.2
Aqoxy7G03848 Aquilegia oxysepala HOM05D006226 ORTHO05D007738 1.7e-211 740.0 688 57.8
AUR62010999 Chenopodium quinoa HOM05D006226 ORTHO05D007738 1.7e-211 740.0 701 57.2
AUR62021510 Chenopodium quinoa HOM05D006226 ORTHO05D007738 3.3e-210 735.7 703 57.0
Sc16g0007880 Simmondsia chinensis HOM05D006226 ORTHO05D007738 4.3e-210 735.3 702 56.0
Cpa.g.sc23.97 Carica papaya HOM05D006226 ORTHO05D007738 2.8e-209 732.6 615 63.6
Gohir.A05G023700 Gossypium hirsutum HOM05D006226 ORTHO05D007738 2.3e-208 729.6 708 55.5
Actinidia32679 Actinidia chinensis HOM05D006226 ORTHO05D007738 4.4e-207 725.3 614 62.5
PSO210G1415 Papaver somniferum HOM05D006226 ORTHO05D007738 4.4e-207 725.3 663 58.5
HanXRQChr12g0354991 Helianthus annuus HOM05D006226 ORTHO05D007738 9.8e-207 724.2 662 57.6
PSO210G0226 Papaver somniferum HOM05D006226 ORTHO05D007738 8.3e-206 721.1 663 58.1
Nitab4.5_0004070g0080 Nicotiana tabacum HOM05D006226 ORTHO05D007738 2.7e-204 716.1 667 56.8
Cc06_g09770 Coffea canephora HOM05D006226 ORTHO05D007738 1.1e-202 710.7 724 55.0
FAN28G0796 Fragaria x ananassa HOM05D006226 ORTHO05D007738 3.6e-201 705.7 623 60.5
Sopen11g026750 Solanum pennellii HOM05D006226 ORTHO05D007738 4.9e-198 695.3 665 55.8
PGSC0003DMG400026545 Solanum tuberosum HOM05D006226 ORTHO05D007738 1.1e-197 694.1 647 57.3
CAN.G644.14 Capsicum annuum HOM05D006226 ORTHO05D007738 1.3e-195 687.2 714 52.5
AL3G40100 Arabidopsis lyrata HOM05D006226 ORTHO05D007738 1.9e-194 683.3 630 57.9
PGR142G1694 Punica granatum HOM05D006226 ORTHO05D007738 2.5e-194 682.9 703 54.3
THA.LOC104808766 Tarenaya hassleriana HOM05D006226 ORTHO05D007738 1.6e-193 680.2 747 50.6
CARHR100790 Cardamine hirsuta HOM05D006226 ORTHO05D007738 1.4e-192 677.2 712 52.4
AT3G24560 Arabidopsis thaliana HOM05D006226 ORTHO05D007738 4.0e-192 675.6 714 53.6
ECA233G1203 Erigeron canadensis HOM05D006226 ORTHO05D007738 5.2e-192 675.2 631 58.2
Carub.0003s2495 Capsella rubella HOM05D006226 ORTHO05D007738 2.9e-190 669.5 705 52.3
Sp3g22350 Schrenkiella parvula HOM05D006226 ORTHO05D007738 1.4e-189 667.2 693 53.1
BcaB06g26659 Brassica carinata HOM05D006226 ORTHO05D007738 9.2e-189 664.5 695 53.7
BraA07t28567Z Brassica rapa HOM05D006226 ORTHO05D007738 7.8e-188 661.4 664 54.7
Thhalv10002431m.g Eutrema salsugineum HOM05D006226 ORTHO05D007738 2.3e-187 659.8 709 51.8
Nitab4.5_0006735g0020 Nicotiana tabacum HOM05D006226 ORTHO05D007738 3.9e-187 659.1 677 52.4
BcaC06g35722 Brassica carinata HOM05D006226 ORTHO05D007738 8.6e-187 657.9 664 54.8
BolC7t41639H Brassica oleracea HOM05D006226 ORTHO05D007738 8.6e-187 657.9 664 54.8
C07p11670 Brassica napus HOM05D006226 ORTHO05D007738 3.1e-184 649.4 664 54.4
A07p07760 Brassica napus HOM05D006226 ORTHO05D007738 1.5e-183 647.1 686 52.8
SalBow6G3053 Salvia bowleyana HOM05D006226 ORTHO05D007738 5.8e-183 645.2 652 53.1
CsaV3_1G025440 Cucumis sativus L. HOM05D006226 ORTHO05D007738 1.9e-181 640.2 543 59.9
Lsat_1_v5_gn_8_3640 Lactuca sativa HOM05D006226 ORTHO05D007738 4.1e-181 639.0 712 51.4
DCAR_002532 Daucus carota HOM05D006226 ORTHO05D007738 9.2e-181 637.9 640 54.5
Migut.C00317 Erythranthe guttata HOM05D006226 ORTHO05D007738 1.2e-180 637.5 657 54.2
Atru.chr7.1363 Acer truncatum HOM05D006226 ORTHO05D007738 2.7e-180 636.3 467 69.0
Aa31sc29G50 Aethionema arabicum HOM05D006226 ORTHO05D007738 6.2e-177 625.2 721 49.5
Migut.G00900 Erythranthe guttata HOM05D006226 ORTHO05D007738 8.1e-177 624.8 641 53.0
Migut.K01516 Erythranthe guttata HOM05D006226 ORTHO05D007738 1.1e-170 604.4 670 51.3
Haze_25736 Corylus avellana HOM05D006226 ORTHO05D007738 1.5e-170 604.0 310 96.5
Thecc.09G109000 Theobroma cacao HOM05D006226 ORTHO05D007738 3.6e-169 599.4 441 67.6
CANSAT56G4481 Cannabis sativa HOM05D006226 ORTHO05D007738 1.7e-166 590.5 504 62.3
Gohir.D05G025200 Gossypium hirsutum HOM05D006226 ORTHO05D007738 7.1e-165 585.1 529 58.2
CSS0010508 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 3.9e-163 579.3 610 54.9
Hund09200 Selenicereus undatus HOM05D006226 ORTHO05D007738 1.9e-162 577.0 700 49.1
EL10Ac8g18501 Beta vulgaris HOM05D006226 ORTHO05D007738 3.1e-160 569.7 676 51.3
Zm00001eb237720 Zea mays HOM05D006226 ORTHO05D007738 4.5e-159 565.8 689 45.1
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 2.9e-158 563.1 719 45.6
CSS0044649 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 1.9e-157 560.5 610 53.9
Ah.14g081980 Amaranthus hybridus HOM05D006226 ORTHO05D007738 1.8e-147 527.3 532 54.3
MBI04_g22018_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 1.2e-143 514.6 379 67.8
Nn8g39152 Nelumbo nucifera HOM05D006226 ORTHO05D007738 2.5e-138 496.9 350 70.3
Oeu002240.1 Olea europaea HOM05D006226 ORTHO05D007738 1.3e-137 494.6 495 54.5
Lalb_Chr06g0174391 Lupinus albus HOM05D006226 ORTHO05D007738 8.5e-126 455.3 341 67.2
Hma1.2p1_1463F.1_g285100 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 1.7e-113 414.5 402 57.5
unitig_748.g7367 Utricularia gibba HOM05D006226 ORTHO05D007738 2.5e-109 400.6 650 39.5
ATR0315G013 Amborella trichopoda HOM05D006226 ORTHO05D007738 1.5e-106 391.3 306 62.7
Solyc11g067040.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 1.1e-101 375.2 340 57.4
AagrBONN_evm.TU.Sc2ySwM_368.2586 Anthoceros agrestis HOM05D006226 ORTHO05D007738 7.2e-101 372.5 653 36.0
Peaxi162Scf01284g00025 Petunia axillaris HOM05D006226 ORTHO05D007738 1.5e-98 364.8 291 62.5
Lalb_Chr06g0174401 Lupinus albus HOM05D006226 ORTHO05D007738 1.6e-92 344.7 325 54.2
Peaxi162Scf01284g00019 Petunia axillaris HOM05D006226 ORTHO05D007738 2.0e-87 327.8 377 49.6
Mapoly0045s0077 Marchantia polymorpha HOM05D006226 ORTHO05D007738 2.3e-86 324.3 697 32.7
Solyc11g067030.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 6.6e-86 322.8 378 48.7
ECA234G2375 Erigeron canadensis HOM05D006226 ORTHO05D007738 4.7e-84 316.6 611 35.7
MBI04_g29967_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 2.5e-77 294.3 406 45.6
Hma1.2p1_1463F.1_g285110 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 4.4e-74 283.5 313 52.1
SMO170G0077 Selaginella moellendorffii HOM05D006226 ORTHO05D007738 1.5e-69 268.5 645 31.6
Pp3c5_3840 Physcomitrium patens HOM05D006226 ORTHO05D007738 1.9e-64 251.5 554 30.9
ATR0315G018 Amborella trichopoda HOM05D006226 ORTHO05D007738 9.6e-61 239.2 328 43.3
CDE04G3650 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 3.1e-51 207.6 147 66.7
CANSAT56G3567 Cannabis sativa HOM05D006226 ORTHO05D007738 4.5e-50 203.8 129 71.3
Nitab4.5_0004070g0110 Nicotiana tabacum HOM05D006226 ORTHO05D007738 1.1e-43 182.6 251 42.6
SGA_v2.0_scaffold3110G54276 Striga asiatica HOM05D006226 ORTHO05D007738 1.2e-39 169.1 129 60.5
SGA_v2.0_scaffold88G27188 Striga asiatica HOM05D006226 ORTHO05D007738 5.1e-38 163.7 184 47.8
CBR_g23439 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-37 159.8 244 40.2
Os02g0266500 Oryza sativa ssp. japonica HOM05D006226 ORTHO05D007738 1.4e-35 155.6 123 58.5
Nitab4.5_0004070g0120 Nicotiana tabacum HOM05D006226 ORTHO05D007738 6.5e-33 146.7 188 45.2
SEGI_09304 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 1.3e-30 139.0 144 47.9
HanXRQChr00c0062g0571541 Helianthus annuus HOM05D006226 ORTHO05D007738 1.3e-25 122.5 182 39.6
Lsat_1_v5_gn_4_168221 Lactuca sativa HOM05D006226 ORTHO05D007738 3.3e-21 107.8 162 40.7
Actinidia07412 Actinidia chinensis HOM05D006226 ORTHO05D007738 6.9e-19 100.1 299 32.1
HPP92_005262 Vanilla planifolia HOM05D006226 ORTHO05D007738 7.7e-18 96.7 77 61.0
SEGI_25817 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 3.8e-17 94.4 78 55.1
HanXRQChr00c0062g0571551 Helianthus annuus HOM05D006226 ORTHO05D007738 5.5e-16 90.5 115 44.3
CDE04G0435 Ceratophyllum demersum HOM05D006226 ORTHO05D007738 2.1e-15 88.6 177 35.0
Medtr6g087540 Medicago truncatula HOM05D006226 ORTHO05D007738 3.9e-14 84.3 149 36.9
MCO09G126 Micromonas commoda HOM05D006226 ORTHO05D007738 2.0e-13 82.0 213 30.5
Pp3c24_3750 Physcomitrium patens HOM05D028917 ORTHO05D023487 7.4e-13 80.1 315 24.8
PRCOL_00000419 Prasinoderma coloniale HOM05D006226 ORTHO05D023487 5.3e-11 73.9 220 26.4
Mapoly0061s0136 Marchantia polymorpha HOM05D028917 ORTHO05D023487 7.7e-10 70.1 320 25.0
HPP92_005261 Vanilla planifolia HOM05D006226 ORTHO05D007738 2.2e-09 68.6 72 44.4
AagrBONN_evm.TU.Sc2ySwM_362.2567 Anthoceros agrestis HOM05D028917 ORTHO05D023487 1.0e-06 59.7 152 28.9


User provided reference genes

Program Settings