Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 4.4e-175 617.8 314 100.0
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 2.7e-164 582.0 321 93.8
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 3.8e-134 481.9 322 77.0
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 1.4e-133 479.9 322 76.7
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 4.4e-130 468.4 322 75.5
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 5.0e-102 375.2 327 63.0
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 8.6e-102 374.4 325 64.0
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 8.6e-102 374.4 328 62.2
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 3.3e-101 372.5 314 65.0
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 5.6e-101 371.7 329 62.6
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 2.8e-100 369.4 325 62.8
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 4.7e-100 368.6 320 64.7
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 4.7e-100 368.6 335 62.1
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 1.8e-99 366.7 332 59.6
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 2.3e-99 366.3 319 64.3
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 5.2e-99 365.2 319 64.3
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 8.9e-99 364.4 318 63.8
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.2e-98 364.0 318 62.6
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 2.6e-98 362.8 322 61.5
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 2.6e-98 362.8 329 62.3
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 7.5e-98 361.3 322 61.2
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 9.8e-98 360.9 319 62.4
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 1.3e-97 360.5 320 61.9
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 1.7e-97 360.1 321 61.1
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 1.7e-97 360.1 313 62.9
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 1.7e-97 360.1 312 64.1
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 1.4e-96 357.1 320 61.2
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 1.8e-96 356.7 312 61.2
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 2.4e-96 356.3 324 60.8
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 9.2e-96 354.4 329 59.9
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 2.0e-95 353.2 314 62.4
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.7e-95 352.8 314 63.1
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 1.3e-94 350.5 314 62.7
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.3e-94 350.5 314 62.7
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 1.7e-94 350.1 313 61.0
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.7e-94 350.1 322 59.6
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.5e-93 346.3 314 62.7
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 4.3e-93 345.5 320 60.9
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 9.5e-93 344.4 321 60.4
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.6e-92 343.6 326 61.0
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.8e-92 342.8 326 60.7
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 2.8e-92 342.8 329 58.1
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 2.8e-92 342.8 329 58.1
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 1.0e-91 340.9 327 56.6
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 4.0e-91 339.0 371 54.2
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 5.8e-90 335.1 314 61.1
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 1.7e-89 333.6 312 60.9
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 2.9e-89 332.8 321 57.9
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 4.9e-89 332.0 314 57.0
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 6.4e-89 331.6 314 58.0
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 1.4e-88 330.5 328 54.9
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 4.1e-88 328.9 315 58.1
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 5.4e-88 328.6 328 55.2
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 2.7e-87 326.2 327 55.7
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 1.0e-86 324.3 314 58.6
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 1.3e-86 323.9 323 56.7
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 3.9e-86 322.4 321 58.3
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 3.9e-86 322.4 309 57.9
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 5.0e-86 322.0 314 55.1
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 1.5e-85 320.5 328 54.6
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 2.5e-85 319.7 333 54.7
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 7.3e-85 318.2 340 53.8
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 1.2e-84 317.4 328 54.9
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 5.2e-83 312.0 313 57.2
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 6.8e-83 311.6 334 55.1
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 4.4e-82 308.9 310 55.8
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 4.4e-82 308.9 320 58.1
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 7.5e-82 308.1 328 53.0
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 7.5e-82 308.1 312 55.8
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 2.9e-81 306.2 315 56.8
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 1.9e-80 303.5 329 54.4
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 1.6e-79 300.4 339 54.9
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 1.0e-78 297.7 312 52.6
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 8.6e-78 294.7 296 59.1
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 1.9e-77 293.5 313 55.9
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 1.8e-75 287.0 313 52.4
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 1.8e-75 287.0 339 54.6
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 3.1e-75 286.2 312 57.1
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 6.8e-75 285.0 314 54.1
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 1.2e-74 284.3 312 51.9
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 2.6e-74 283.1 314 52.9
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 2.9e-73 279.6 328 51.2
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 4.9e-73 278.9 313 52.1
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 1.4e-72 277.3 313 52.4
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 1.9e-72 276.9 313 52.1
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 1.9e-72 276.9 313 52.1
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 1.6e-71 273.9 312 52.2
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 1.6e-71 273.9 312 51.9
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 3.5e-71 272.7 273 55.7
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 6.0e-71 271.9 317 51.4
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.0e-70 271.2 327 51.7
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 1.3e-70 270.8 313 49.5
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 6.6e-70 268.5 316 50.3
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 2.5e-69 266.5 314 49.7
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 1.2e-68 264.2 314 50.6
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 1.2e-68 264.2 327 50.8
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 6.8e-67 258.5 330 49.1
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 2.9e-65 253.1 325 48.0
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 8.4e-65 251.5 325 47.7
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 4.6e-63 245.7 408 42.4
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 5.6e-61 238.8 155 74.2
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 2.9e-57 226.5 315 45.4
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 1.8e-51 207.2 333 40.8
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 3.1e-43 179.9 316 37.7
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 9.0e-43 178.3 311 38.3
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 4.6e-39 166.0 165 55.2
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 3.0e-38 163.3 322 39.8
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 3.9e-38 162.9 160 52.5
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 5.7e-37 159.1 272 40.1
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 2.9e-33 146.7 362 33.4
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 3.8e-33 146.4 204 42.6
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 5.0e-33 146.0 142 53.5
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 7.2e-32 142.1 266 42.1
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 2.3e-30 137.1 344 31.4
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 1.4e-27 127.9 141 46.1
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 3.1e-27 126.7 229 40.6
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 6.9e-27 125.6 128 46.1
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.3e-25 121.3 229 39.7
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 2.7e-23 113.6 95 60.0
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 1.4e-22 111.3 138 42.0
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 2.4e-19 100.5 57 71.9
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 3.1e-19 100.1 57 71.9
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 2.0e-18 97.4 163 38.7
Actinidia25232 Actinidia chinensis HOM05D006355 ORTHO05D008284 2.2e-09 67.4 110 40.9
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 7.2e-08 62.4 42 71.4
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 8.0e-07 58.9 112 40.2


User provided reference genes

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