Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 2629.7 1357 100.0
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1979.9 1488 71.2
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1777.7 1364 69.4
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1759.6 1385 68.5
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1745.3 1358 69.1
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1718.7 1358 68.6
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1718.4 1393 69.2
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1717.2 1359 67.8
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1708.0 1371 67.8
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1694.1 1360 67.4
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1680.2 1359 66.3
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1662.5 1358 66.5
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1659.4 1452 63.3
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1653.3 1358 66.2
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1650.6 1357 66.0
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1644.4 1363 66.7
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 0.0e+00 1641.3 910 93.8
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1632.1 1364 64.7
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1599.3 1357 64.3
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1570.8 1362 64.5
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1555.8 1360 63.0
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1552.0 1362 63.5
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1550.0 1359 62.2
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1542.7 1477 60.4
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1530.4 1349 60.6
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1529.6 1363 62.4
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1527.3 1354 61.5
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1520.8 1406 60.7
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1518.8 1365 61.8
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1505.0 1361 60.6
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1497.3 1360 59.8
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1495.7 1355 59.8
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1494.9 1415 59.5
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1491.5 1372 60.1
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1490.7 1355 60.3
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1486.9 1355 60.1
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1481.8 1408 58.8
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1479.5 1354 58.9
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1468.8 1370 59.6
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1463.7 1409 57.4
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1457.6 1408 58.3
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1452.6 1410 58.0
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1442.2 1364 58.9
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1439.5 1380 57.7
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1437.6 1363 58.7
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1436.4 1359 58.9
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1430.6 1355 59.4
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1427.5 1353 58.2
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1415.6 1353 58.8
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1407.5 1385 55.8
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1402.1 1415 56.7
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1401.7 1371 56.9
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1387.5 1359 56.7
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1385.2 1354 57.1
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1379.8 1383 58.1
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1371.7 1357 56.7
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1366.7 1380 55.9
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1339.7 1373 55.6
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1328.5 1354 55.2
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1317.4 1438 52.6
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1317.4 1396 53.4
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1310.0 1371 55.3
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1303.5 1366 54.8
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1303.1 1418 53.3
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1302.7 1366 55.1
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1298.5 1382 54.2
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1286.6 1428 52.0
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1283.9 1405 53.4
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1260.4 1368 53.7
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1259.6 1362 52.6
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1258.0 1360 53.1
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1256.1 1325 54.9
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1248.4 1371 52.7
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1246.1 1366 52.6
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1242.6 1376 52.8
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1242.3 1373 52.7
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1241.5 1361 53.0
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1239.6 1369 52.5
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1236.9 1372 52.4
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1236.9 1372 52.4
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1236.9 1372 52.4
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1234.9 1361 53.1
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1234.9 1081 62.8
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1234.2 1375 52.4
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1232.6 1378 52.1
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1220.3 1364 52.1
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 0.0e+00 1209.9 1358 53.2
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1187.2 1378 50.8
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1178.7 1363 50.7
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1160.6 1271 52.9
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1141.3 826 74.0
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 0.0e+00 1139.4 1392 48.9
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 0.0e+00 1123.6 1363 48.7
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 0.0e+00 1090.9 1366 47.4
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 6.6e-308 1061.2 1103 55.2
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 5.4e-294 1015.0 1322 46.8
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 9.2e-294 1014.2 915 62.3
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 2.1e-250 870.2 854 57.8
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 1.1e-246 857.8 925 56.4
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 7.7e-240 835.1 713 64.2
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 7.9e-237 825.1 716 63.0
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 9.1e-233 811.6 846 56.0
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 1.1e-222 778.1 642 67.1
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 1.1e-222 778.1 771 57.8
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 3.6e-221 773.1 684 61.4
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 5.0e-207 726.1 480 77.5
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 6.1e-197 692.6 359 98.3
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 8.1e-173 612.5 600 55.0
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 5.4e-169 599.7 1283 33.8
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 1.7e-167 594.7 1365 34.4
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 7.9e-152 542.7 644 46.6
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 8.4e-146 522.7 1322 31.1
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 4.6e-144 516.9 507 55.4
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 3.0e-143 514.2 359 70.2
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 6.2e-141 506.5 1063 35.9
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 1.0e-135 489.2 1213 30.1
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 3.1e-132 477.6 1160 32.8
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 8.8e-119 433.0 417 51.3
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 5.7e-102 377.1 676 36.8
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 9.1e-100 369.8 439 46.0
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 5.7e-86 323.9 238 67.6
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 4.9e-85 320.9 326 48.8
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.0e-75 288.9 352 48.0
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 2.3e-74 285.4 370 50.3
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.5e-73 282.0 317 50.5
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 8.9e-71 273.5 231 65.8
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 3.1e-63 248.4 330 45.8
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.3e-50 206.5 202 58.4
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 8.7e-50 203.8 271 44.3
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 1.9e-49 202.6 260 42.7
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.7e-45 189.5 121 77.7
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 1.3e-42 179.9 300 42.3
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 1.2e-35 156.8 170 51.2
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 5.3e-31 141.4 512 27.0
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 2.4e-28 132.5 216 41.7
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 5.5e-28 131.3 380 27.4
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.1e-25 123.6 432 26.6
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.0e-23 115.2 140 50.7
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 5.8e-22 111.3 95 62.1
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 2.9e-21 109.0 427 24.1
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 1.6e-19 103.2 420 26.9
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.2e-14 87.0 85 58.8
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 3.4e-14 85.5 69 62.3
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 2.1e-11 76.3 137 40.1
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 8.2e-08 64.3 45 68.9
TAR376G0051 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.1e-07 62.0 146 37.7
MBI19_g06116_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D036548 9.1e-07 60.8 39 74.4
Sabra05G0049200 Salix brachista HOM05D005030 ORTHO05D006490 9.1e-07 60.8 97 44.3


User provided reference genes

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