Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 1.1e-96 356.7 179 100.0
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 8.7e-51 204.1 127 82.7
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 8.2e-49 197.6 158 65.8
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 1.4e-48 196.8 128 76.6
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 9.4e-45 184.1 137 71.5
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 9.4e-45 184.1 169 62.1
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 2.1e-44 183.0 129 73.6
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 3.6e-44 182.2 127 69.3
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 7.9e-44 181.0 138 67.4
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 1.5e-42 176.8 141 64.5
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 2.0e-42 176.4 127 69.3
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 1.3e-41 173.7 128 68.0
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 2.8e-41 172.6 127 70.1
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 6.3e-41 171.4 126 67.5
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 1.1e-40 170.6 127 69.3
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 6.9e-40 167.9 125 68.0
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 1.2e-39 167.2 127 66.9
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 2.6e-39 166.0 144 59.7
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 4.5e-39 165.2 126 65.1
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 5.9e-39 164.9 129 65.9
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 1.3e-38 163.7 127 65.4
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 1.7e-38 163.3 127 64.6
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 3.8e-38 162.2 93 83.9
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 3.8e-38 162.2 93 83.9
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 9.4e-37 157.5 127 60.6
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 2.1e-36 156.4 158 57.0
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 3.6e-36 155.6 127 59.8
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 6.1e-36 154.8 126 62.7
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 6.1e-36 154.8 167 51.5
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 1.8e-35 153.3 122 64.8
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 2.3e-35 152.9 146 54.8
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 2.3e-35 152.9 127 59.8
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 3.9e-35 152.1 146 54.1
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 5.1e-35 151.8 128 62.5
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 2.0e-34 149.8 130 58.5
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 2.0e-34 149.8 169 49.1
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 3.3e-34 149.1 128 57.0
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 3.3e-34 149.1 146 58.9
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 3.3e-34 149.1 134 56.7
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 7.4e-34 147.9 132 59.1
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 7.4e-34 147.9 125 60.0
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 1.3e-33 147.1 162 49.4
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 1.3e-33 147.1 128 60.2
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 3.7e-33 145.6 142 53.5
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 6.3e-33 144.8 126 59.5
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 1.4e-32 143.7 126 60.3
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.4e-32 143.7 132 56.8
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 1.8e-32 143.3 128 61.7
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 3.1e-32 142.5 158 50.6
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 3.1e-32 142.5 153 52.3
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 5.3e-32 141.7 141 55.3
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 7.0e-32 141.4 162 50.6
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 1.2e-31 140.6 153 51.6
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 1.2e-31 140.6 143 53.8
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.6e-31 139.4 165 48.5
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 3.5e-31 139.0 124 58.1
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 3.5e-31 139.0 134 53.0
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 4.5e-31 138.7 158 51.3
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 4.5e-31 138.7 124 54.8
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 1.0e-30 137.5 164 50.0
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 1.3e-30 137.1 137 54.0
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 1.3e-30 137.1 167 47.9
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 2.9e-30 136.0 124 57.3
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 3.8e-30 135.6 143 50.3
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 2.5e-29 132.9 161 49.1
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 5.5e-29 131.7 138 54.3
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 9.4e-29 131.0 122 52.5
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 1.6e-28 130.2 171 48.0
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 4.7e-28 128.6 165 47.3
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 2.3e-27 126.3 123 53.7
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 3.9e-27 125.6 173 45.7
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 2.0e-26 123.2 180 42.8
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 5.7e-26 121.7 125 52.8
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 7.4e-26 121.3 169 44.4
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 6.3e-25 118.2 143 48.3
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 8.2e-25 117.9 170 44.1
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 1.8e-24 116.7 146 45.9
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 2.4e-24 116.3 193 41.5
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 1.3e-22 110.5 132 48.5
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 5.0e-22 108.6 132 47.7
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 6.5e-22 108.2 160 43.1
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 4.2e-21 105.5 95 61.1
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 7.2e-21 104.8 202 36.6
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 9.4e-21 104.4 127 45.7
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 4.7e-20 102.1 127 48.0
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 6.1e-20 101.7 137 45.3
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 1.8e-19 100.1 132 43.2
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 3.0e-19 99.4 202 35.6
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 3.0e-19 99.4 129 43.4
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 4.4e-18 95.5 199 35.7
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 4.4e-18 95.5 127 43.3
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 5.7e-18 95.1 173 39.9
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 1.3e-17 94.0 129 43.4
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 2.2e-17 93.2 161 38.5
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 2.2e-17 93.2 131 43.5
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 4.8e-17 92.0 73 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 4.8e-17 92.0 116 44.8
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 2.4e-16 89.7 119 49.6
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 3.1e-16 89.4 100 49.0
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 3.1e-16 89.4 47 80.9
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.6e-15 87.0 76 59.2
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.7e-14 83.6 76 57.9
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.7e-14 83.6 76 57.9
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 1.7e-14 83.6 76 57.9
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 2.2e-14 83.2 105 48.6
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 8.5e-14 81.3 96 46.9
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 1.1e-13 80.9 101 47.5
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 2.7e-12 76.3 90 51.1
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 6.1e-12 75.1 130 35.4
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 2.6e-10 69.7 71 54.9
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 9.8e-10 67.8 122 41.0
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 3.7e-09 65.9 106 40.6
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 9.1e-08 61.2 48 64.6
BraA03t14903Z Brassica rapa HOM05D006778 ORTHO05D008341 2.0e-07 60.1 154 33.8
unitig_749.g13722 Utricularia gibba HOM05D006778 ORTHO05D008341 1.3e-06 57.4 107 37.4
SalBow4G1478 Salvia bowleyana HOM05D006778 ORTHO05D008341 3.8e-06 55.8 53 49.1


User provided reference genes

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