Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 1.5e-194 682.9 413 100.0
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.0e-174 617.1 453 87.6
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.6e-140 503.4 412 75.7
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.6e-132 476.9 413 71.7
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.2e-100 370.9 413 58.8
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.5e-98 364.0 411 56.9
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 2.4e-96 356.7 407 61.9
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 7.1e-96 355.1 398 55.3
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 3.9e-94 349.4 417 51.3
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.9e-93 347.1 409 53.1
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 3.3e-93 346.3 404 56.4
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 8.1e-92 341.7 426 50.0
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 8.9e-91 338.2 412 51.5
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.6e-90 336.7 412 51.0
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.7e-89 334.0 416 50.2
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.2e-87 327.8 410 50.7
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 2.1e-87 327.0 421 59.6
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.7e-87 326.6 430 54.9
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.0e-86 324.7 420 53.6
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 1.3e-86 324.3 435 51.0
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 1.7e-86 323.9 423 58.2
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 6.6e-86 322.0 400 57.5
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.1e-85 321.2 418 56.5
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.5e-85 320.9 403 56.3
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.9e-85 320.5 411 53.8
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 7.3e-85 318.5 416 55.5
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 8.1e-84 315.1 410 48.8
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 9.0e-83 311.6 418 52.4
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.6e-82 310.1 418 55.5
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 4.5e-82 309.3 413 52.5
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 9.9e-82 308.1 411 52.6
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.3e-81 307.8 411 49.4
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.7e-81 307.4 405 50.4
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 4.9e-81 305.8 414 48.6
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 4.9e-81 305.8 410 51.2
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 6.4e-81 305.4 406 50.2
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.1e-80 304.7 409 46.2
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.1e-80 304.7 411 50.1
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.4e-80 304.3 448 50.4
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 2.4e-80 303.5 415 48.9
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 5.4e-80 302.4 409 48.2
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.2e-79 301.2 404 50.2
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 2.1e-79 300.4 412 49.5
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 4.6e-79 299.3 409 46.9
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 7.9e-79 298.5 435 49.9
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.0e-78 298.1 411 53.8
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.7e-78 297.4 416 50.7
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.0e-78 296.6 409 47.7
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 3.0e-78 296.6 412 51.0
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 5.1e-78 295.8 412 50.2
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.5e-77 294.3 412 48.3
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 1.9e-77 293.9 419 51.8
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.3e-77 292.7 412 47.8
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 5.6e-77 292.4 395 48.6
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 4.8e-76 289.3 416 44.7
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.1e-75 288.1 408 48.3
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 1.1e-75 288.1 413 47.9
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.4e-75 287.7 442 48.2
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 6.9e-75 285.4 424 44.1
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 2.0e-74 283.9 422 43.8
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 5.8e-74 282.3 411 44.0
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 8.4e-73 278.5 414 43.7
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 9.3e-72 275.0 389 53.2
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 9.3e-72 275.0 418 49.5
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 6.0e-71 272.3 446 51.3
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 3.9e-70 269.6 404 43.3
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 8.7e-70 268.5 402 53.2
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 1.1e-69 268.1 399 52.9
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.3e-69 266.5 431 42.7
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.3e-68 264.6 404 52.0
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 2.8e-68 263.5 410 49.3
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 3.1e-67 260.0 422 47.6
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 1.5e-66 257.7 405 50.4
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 2.0e-66 257.3 353 45.6
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 4.5e-66 256.1 416 42.8
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 2.2e-65 253.8 415 46.3
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 2.9e-65 253.4 416 43.5
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 3.8e-65 253.1 409 43.8
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 4.9e-65 252.7 416 48.1
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 8.4e-65 251.9 418 45.7
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.9e-64 250.8 295 51.2
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.6e-63 247.7 416 42.8
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 2.1e-60 237.3 351 45.9
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 6.3e-60 235.7 402 42.8
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 5.3e-59 232.6 400 47.8
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 9.0e-59 231.9 412 40.3
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 4.5e-58 229.6 424 42.9
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.7e-57 227.6 220 60.0
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.8e-57 226.5 352 43.2
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 5.5e-56 222.6 420 43.3
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 1.2e-55 221.5 426 40.1
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.5e-53 213.8 428 42.8
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.3e-53 213.4 419 44.9
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 7.4e-53 212.2 421 42.5
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 1.1e-51 208.4 420 41.9
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 1.1e-51 208.4 420 41.9
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 1.1e-51 208.4 420 41.9
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.1e-51 208.4 434 44.2
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.8e-51 207.6 464 39.0
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 2.4e-51 207.2 423 42.3
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 2.4e-51 207.2 423 42.3
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 1.2e-50 204.9 388 40.5
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.5e-50 204.5 440 42.0
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 2.0e-50 204.1 436 42.7
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 2.0e-50 204.1 184 65.2
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 2.0e-50 204.1 418 40.7
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 3.4e-50 203.4 378 41.5
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.2e-49 200.7 426 42.3
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 8.5e-49 198.7 432 40.3
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.9e-48 197.6 404 43.8
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.9e-48 197.6 408 43.9
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 6.1e-47 192.6 432 38.4
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 7.9e-47 192.2 430 40.0
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 7.9e-47 192.2 430 40.0
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 2.3e-46 190.7 426 41.8
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.9e-46 189.9 429 34.7
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 5.1e-46 189.5 193 58.0
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 6.7e-46 189.1 420 39.8
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 6.7e-46 189.1 420 39.8
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 6.7e-46 189.1 415 36.9
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.1e-45 188.3 418 38.8
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 7.4e-45 185.7 412 39.1
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 9.7e-45 185.3 355 39.2
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.7e-44 184.5 411 39.7
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 7.7e-42 175.6 423 41.4
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.3e-41 174.9 409 35.9
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.9e-41 173.7 282 47.9
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.0e-38 165.2 430 40.7
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.1e-37 161.8 403 35.0
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 5.7e-37 159.5 295 42.4
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 1.7e-36 157.9 361 41.3
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 3.7e-36 156.8 406 39.4
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 7.7e-34 149.1 401 34.9
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.9e-33 147.1 271 41.3
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 3.6e-31 140.2 412 32.5
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.2e-30 136.3 426 35.7
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 6.5e-25 119.4 200 46.0
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.5e-24 118.2 212 40.6
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 4.7e-23 113.2 237 43.0
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 3.4e-13 80.5 360 28.1
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 2.8e-12 77.4 129 42.6
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 4.1e-11 73.6 155 39.4
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 4.7e-07 60.1 46 71.7
Psat2g009520 Pisum sativum HOM05D005109 ORTHO05D006084 3.0e-06 57.4 99 42.4


User provided reference genes

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