Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 0.0e+00 1395.9 714 100.0
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 0.0e+00 1130.5 634 93.1
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 0.0e+00 1129.8 721 79.2
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 0.0e+00 1120.9 724 80.1
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 0.0e+00 1097.4 730 77.5
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 1.3e-286 989.6 716 70.8
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.1e-277 959.9 714 69.9
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 6.2e-265 917.5 723 66.9
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 1.7e-262 909.4 722 65.7
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.7e-262 909.4 733 65.6
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 4.1e-261 904.8 736 65.4
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 4.7e-257 891.3 722 65.2
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 4.0e-256 888.3 726 64.0
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 2.6e-255 885.6 727 65.2
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 7.6e-255 884.0 732 63.4
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 7.6e-255 884.0 718 65.0
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.1e-253 880.2 732 63.3
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 3.2e-253 878.6 733 63.2
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 5.4e-253 877.9 732 64.9
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.6e-252 876.3 714 64.6
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.6e-252 876.3 725 64.1
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 6.0e-252 874.4 727 64.2
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 5.1e-251 871.3 726 62.8
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 7.3e-250 867.5 720 63.1
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 3.6e-249 865.1 726 63.6
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.8e-248 862.8 726 64.2
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 5.3e-248 861.3 728 62.1
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 5.3e-248 861.3 719 63.3
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 2.2e-246 855.9 717 63.0
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 2.2e-246 855.9 726 63.5
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 2.9e-246 855.5 726 63.6
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 8.4e-246 854.0 723 62.1
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.4e-245 853.2 715 64.2
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.9e-245 852.8 717 64.2
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.6e-244 849.7 725 62.1
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 3.5e-244 848.6 734 61.0
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.3e-243 845.9 717 62.5
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 3.9e-243 845.1 729 62.4
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 6.6e-243 844.3 724 63.0
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.9e-242 842.8 727 63.0
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.3e-242 841.6 717 62.6
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 5.6e-242 841.3 733 60.8
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 6.2e-241 837.8 728 60.6
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 6.2e-241 837.8 728 61.8
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 8.1e-241 837.4 717 62.1
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 3.1e-240 835.5 755 58.8
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.4e-239 832.0 717 61.8
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 9.9e-239 830.5 717 62.3
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.3e-238 830.1 735 60.7
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.4e-237 826.6 736 61.1
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 4.8e-225 785.0 637 64.7
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 1.1e-224 783.9 720 57.8
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.1e-224 782.3 726 58.1
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 4.5e-223 778.5 722 56.9
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 3.2e-221 772.3 726 58.4
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.3e-219 766.9 713 58.3
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.9e-219 765.4 717 58.0
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 5.1e-219 765.0 715 56.5
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 6.7e-219 764.6 728 55.9
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.5e-218 763.5 736 56.9
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 5.7e-218 761.5 736 57.7
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 9.7e-218 760.8 755 54.2
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 3.7e-217 758.8 711 57.1
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 4.8e-217 758.4 626 63.6
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.8e-216 756.5 736 56.4
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.2e-215 753.8 755 55.5
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.2e-215 753.8 724 55.9
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 2.0e-215 753.1 674 59.8
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.6e-212 743.4 720 56.8
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 2.1e-212 743.0 718 56.3
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 2.1e-212 743.0 707 57.4
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.4e-211 740.3 721 55.3
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.7e-209 733.4 647 61.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.2e-209 733.0 707 56.0
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 8.2e-209 731.1 732 54.2
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 1.8e-208 729.9 737 53.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 6.9e-208 728.0 731 54.0
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 1.7e-206 723.4 731 53.8
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 8.5e-206 721.1 602 63.6
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 2.7e-204 716.1 722 53.7
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 3.6e-204 715.7 731 54.9
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 4.7e-204 715.3 734 55.4
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 1.4e-203 713.8 766 51.2
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.4e-203 713.8 723 54.4
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 6.7e-203 711.4 723 54.1
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.5e-202 710.3 733 55.3
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 2.0e-202 709.9 724 53.9
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 2.6e-202 709.5 733 54.7
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 7.4e-202 708.0 720 53.5
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.1e-200 704.1 720 53.2
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.8e-200 703.4 717 53.6
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 4.1e-200 702.2 722 53.3
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 5.0e-198 695.3 732 54.6
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 4.2e-197 692.2 712 51.8
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 5.5e-197 691.8 728 52.7
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 3.6e-196 689.1 728 52.3
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 2.0e-194 683.3 733 53.1
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 4.1e-192 675.6 746 52.5
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.9e-189 666.8 721 51.6
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 1.9e-189 666.8 635 57.8
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 5.5e-189 665.2 676 53.4
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 6.8e-187 658.3 639 55.1
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.6e-186 656.4 726 49.6
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 2.2e-185 653.3 800 48.2
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.1e-184 651.0 714 50.7
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 3.8e-182 642.5 675 50.8
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 2.1e-180 636.7 722 50.1
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 2.6e-178 629.8 637 54.2
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 3.1e-176 622.9 541 62.3
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.4e-171 607.4 714 48.2
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 7.3e-165 585.1 710 47.3
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 9.8e-154 548.1 767 42.4
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.2e-152 543.1 680 46.8
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.5e-149 534.3 534 52.6
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 3.9e-142 509.6 663 44.8
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 8.4e-129 465.3 814 37.2
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 2.7e-127 460.3 732 41.8
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.3e-126 458.0 780 39.0
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 9.9e-122 441.8 717 38.9
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.9e-118 429.9 774 37.2
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 2.5e-96 357.5 552 39.5
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.5e-93 348.2 879 31.1
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 6.3e-84 316.2 582 35.7
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.7e-71 274.2 477 36.1
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.2e-66 258.8 451 38.6
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 1.2e-61 242.3 222 59.0
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 2.0e-61 241.5 678 28.6
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 5.0e-49 200.3 127 75.6
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 8.0e-47 193.0 98 98.0
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.0e-46 190.7 225 44.9
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.2e-45 189.1 172 59.9
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.7e-44 185.3 219 46.6
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.0e-41 176.0 154 57.1
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.6e-39 168.7 310 35.8
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 6.8e-38 163.3 95 72.6
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.0e-33 149.4 95 72.6
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 8.9e-30 136.3 150 52.0
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 4.9e-28 130.6 138 51.4
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 3.0e-25 121.3 259 37.8
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.2e-23 115.9 95 62.1
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.9e-16 92.0 74 58.1
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 9.9e-13 79.7 428 24.3
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 2.4e-11 75.1 164 32.3
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 1.3e-07 62.8 70 47.1
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.3e-07 62.8 70 45.7
DCAR_028055 Daucus carota HOM05D001439 ORTHO05D002726 1.6e-07 62.4 74 41.9
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 2.8e-07 61.6 70 44.3
Cc02_g13850 Coffea canephora HOM05D001439 ORTHO05D002726 6.2e-07 60.5 58 51.7
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 8.1e-07 60.1 70 44.3
Peaxi162Scf00926g00006 Petunia axillaris HOM05D001439 ORTHO05D002726 1.4e-06 59.3 58 48.3
CAN.G529.57 Capsicum annuum HOM05D001439 ORTHO05D002726 1.8e-06 58.9 58 50.0
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 1.8e-06 58.9 56 48.2
Hma1.2p1_0558F.1_g178470 Hydrangea macrophylla HOM05D001439 ORTHO05D002726 1.8e-06 58.9 58 50.0
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 1.8e-06 58.9 86 40.7
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 2.4e-06 58.5 147 34.0
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 4.0e-06 57.8 182 30.8
Actinidia26141 Actinidia chinensis HOM05D001439 ORTHO05D002726 5.3e-06 57.4 56 50.0
SGA_v2.0_scaffold22G09664 Striga asiatica HOM05D001439 ORTHO05D002726 5.3e-06 57.4 56 48.2
Sopen02g022560 Solanum pennellii HOM05D001439 ORTHO05D002726 6.9e-06 57.0 58 50.0
MSTRG.7359 Avicennia marina HOM05D001439 ORTHO05D002726 9.0e-06 56.6 56 48.2
MD10G1289100 Malus domestica HOM05D001439 ORTHO05D002726 9.0e-06 56.6 56 51.8
Solyc07g053610.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 9.0e-06 56.6 56 50.0
Sopen07g027560 Solanum pennellii HOM05D001439 ORTHO05D002726 9.0e-06 56.6 56 50.0


User provided reference genes

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