Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002225 Carpinus fangiana HOM05D003114 ORTHO05D003519 5.4e-113 411.0 204 100.0
Cfa018458 Carpinus fangiana HOM05D003114 ORTHO05D003519 2.5e-25 119.8 71 87.3
Haze_17604 Corylus avellana HOM05D001143 ORTHO05D001457 7.2e-25 118.2 71 85.9
Ca_13324_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 7.9e-24 114.8 70 84.3
Glyma.09G114500 Glycine max HOM05D003114 ORTHO05D003519 7.9e-24 114.8 70 84.3
Thecc.08G020200 Theobroma cacao HOM05D003114 ORTHO05D003519 1.4e-23 114.0 70 82.9
Glyma.17G246600 Glycine max HOM05D003114 ORTHO05D003519 1.8e-23 113.6 70 82.9
Ciclev10000230m.g Citrus clementina HOM05D003114 ORTHO05D003519 2.3e-23 113.2 70 81.4
Lj5g0027441 Lotus japonicus HOM05D003114 ORTHO05D003519 2.3e-23 113.2 70 82.9
Lalb_Chr24g0399101 Lupinus albus HOM05D003114 ORTHO05D003519 2.3e-23 113.2 70 82.9
Atru.chr13.574 Acer truncatum HOM05D003114 ORTHO05D003519 3.9e-23 112.5 70 82.9
Nitab4.5_0000790g0060 Nicotiana tabacum HOM05D003114 ORTHO05D003519 5.2e-23 112.1 77 75.3
Peaxi162Scf00064g00323 Petunia axillaris HOM05D003114 ORTHO05D003519 5.2e-23 112.1 74 77.0
Nitab4.5_0000453g0100 Nicotiana tabacum HOM05D003114 ORTHO05D003519 6.7e-23 111.7 74 77.0
PGSC0003DMG402015451 Solanum tuberosum HOM05D003114 ORTHO05D003519 6.7e-23 111.7 74 77.0
Lsat_1_v5_gn_1_19460 Lactuca sativa HOM05D003114 ORTHO05D003519 8.8e-23 111.3 74 78.4
Phvul.001G017700 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 8.8e-23 111.3 70 81.4
Psat6g010640 Pisum sativum HOM05D003114 ORTHO05D003519 8.8e-23 111.3 69 82.6
Cpa.g.sc64.34 Carica papaya HOM05D003114 ORTHO05D003519 1.1e-22 110.9 70 80.0
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 1.1e-22 110.9 74 78.4
Gohir.A05G197600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.1e-22 110.9 70 80.0
Gohir.D05G200600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.1e-22 110.9 70 80.0
Gorai.009G205900 Gossypium raimondii HOM05D003114 ORTHO05D003519 1.1e-22 110.9 70 80.0
Lj4C47G8 Lonicera japonica HOM05D003114 ORTHO05D003519 1.1e-22 110.9 74 75.7
Ah.02g115940 Amaranthus hybridus HOM05D003114 ORTHO05D003519 1.5e-22 110.5 70 80.0
CAN.G1002.6 Capsicum annuum HOM05D003114 ORTHO05D003519 1.5e-22 110.5 74 77.0
AUR62038454 Chenopodium quinoa HOM05D003114 ORTHO05D003519 1.5e-22 110.5 70 80.0
AUR62042151 Chenopodium quinoa HOM05D003114 ORTHO05D003519 1.5e-22 110.5 70 80.0
Duzib041G0357 Durio zibethinus HOM05D003114 ORTHO05D003519 1.5e-22 110.5 70 80.0
Duzib093G1140 Durio zibethinus HOM05D003114 ORTHO05D003519 1.5e-22 110.5 70 80.0
Eucgr.A00473 Eucalyptus grandis HOM05D003114 ORTHO05D003519 1.5e-22 110.5 70 80.0
Hma1.2p1_0260F.1_g104360 Hydrangea macrophylla HOM05D003114 ORTHO05D003519 1.5e-22 110.5 74 77.0
Manes.18G031300 Manihot esculenta HOM05D003114 ORTHO05D003519 1.5e-22 110.5 70 80.0
EL10Ac5g11704 Beta vulgaris HOM05D003114 ORTHO05D003519 2.0e-22 110.2 70 80.0
Cc10_g03540 Coffea canephora HOM05D003114 ORTHO05D003519 2.0e-22 110.2 74 77.0
Dinv39367 Davidia involucrata HOM05D003114 ORTHO05D003519 2.0e-22 110.2 74 75.7
Solyc12g088990.2 Solanum lycopersicum HOM05D003114 ORTHO05D003519 2.0e-22 110.2 74 75.7
Sopen12g030890 Solanum pennellii HOM05D003114 ORTHO05D003519 2.0e-22 110.2 74 75.7
VMungo0647G1221 Vigna mungo HOM05D003114 ORTHO05D003519 2.0e-22 110.2 70 80.0
arahy.Tifrunner.gnm1.ann1.E8QAF1 Arachis hypogaea HOM05D003114 ORTHO05D003519 2.6e-22 109.8 70 80.0
arahy.Tifrunner.gnm1.ann1.SVX42N Arachis hypogaea HOM05D003114 ORTHO05D003519 2.6e-22 109.8 70 80.0
MSTRG.22284 Avicennia marina HOM05D003114 ORTHO05D003519 3.3e-22 109.4 74 74.3
HanXRQChr02g0045841 Helianthus annuus HOM05D003114 ORTHO05D003519 3.3e-22 109.4 74 75.7
Potri.014G039100 Populus trichocarpa HOM05D003114 ORTHO05D003519 3.3e-22 109.4 70 78.6
Rhsim12G0123700 Rhododendron simsii HOM05D003114 ORTHO05D003519 3.3e-22 109.4 74 75.7
vmacro04486 Vaccinium macrocarpon HOM05D003114 ORTHO05D003519 4.4e-22 109.0 74 75.7
CiPaw.16G052700 Carya illinoinensis HOM05D003114 ORTHO05D003519 5.7e-22 108.6 74 74.3
ECA247G0467 Erigeron canadensis HOM05D003114 ORTHO05D003519 5.7e-22 108.6 74 75.7
Lalb_Chr08g0245771 Lupinus albus HOM05D003114 ORTHO05D003519 5.7e-22 108.6 70 78.6
Prupe.1G385700 Prunus persica HOM05D003114 ORTHO05D003519 5.7e-22 108.6 70 77.1
TAR625G0620 Trochodendron aralioides HOM05D003114 ORTHO05D003519 5.7e-22 108.6 70 80.0
Actinidia38026 Actinidia chinensis HOM05D003114 ORTHO05D003519 7.4e-22 108.2 77 71.4
Gohir.D11G228600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 7.4e-22 108.2 74 75.7
Gorai.007G245700 Gossypium raimondii HOM05D003114 ORTHO05D003519 7.4e-22 108.2 74 75.7
Potri.002G131400 Populus trichocarpa HOM05D003114 ORTHO05D003519 7.4e-22 108.2 70 77.1
Sabra02G0103300 Salix brachista HOM05D003114 ORTHO05D003519 7.4e-22 108.2 70 77.1
Gohir.A11G227433 Gossypium hirsutum HOM05D003114 ORTHO05D003519 9.7e-22 107.8 74 75.7
VMungo1309G2059 Vigna mungo HOM05D003114 ORTHO05D003519 9.7e-22 107.8 74 73.0
Migut.C00667 Erythranthe guttata HOM05D003114 ORTHO05D003519 1.3e-21 107.5 74 74.3
Phvul.007G175100 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 1.3e-21 107.5 73 74.0
TWI36G0061 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 1.3e-21 107.5 70 78.6
SGA_v2.0_scaffold24G10278 Striga asiatica HOM05D003114 ORTHO05D003519 1.7e-21 107.1 74 74.3
THA.LOC104803395 Tarenaya hassleriana HOM05D003114 ORTHO05D003519 1.7e-21 107.1 70 75.7
MSTRG.1310 Avicennia marina HOM05D003114 ORTHO05D003519 2.2e-21 106.7 74 71.6
MSTRG.24311 Avicennia marina HOM05D003114 ORTHO05D003519 2.2e-21 106.7 76 68.4
ClCG05G019260 Citrullus lanatus HOM05D003114 ORTHO05D003519 2.8e-21 106.3 70 78.6
FAN15G2607 Fragaria x ananassa HOM05D003114 ORTHO05D003519 2.8e-21 106.3 66 78.8
SalBow8G4186 Salvia bowleyana HOM05D003114 ORTHO05D003519 2.8e-21 106.3 74 73.0
Migut.E01196 Erythranthe guttata HOM05D003114 ORTHO05D003519 3.7e-21 105.9 74 73.0
FvH4_2g40450 Fragaria vesca HOM05D003114 ORTHO05D003519 3.7e-21 105.9 70 75.7
Sed0021383 Sechium edule HOM05D003114 ORTHO05D003519 3.7e-21 105.9 74 74.3
AL1G53790 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 4.8e-21 105.5 77 72.7
AT1G47550 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 4.8e-21 105.5 77 72.7
AT1G47560 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 4.8e-21 105.5 77 72.7
Carub.0001s3632 Capsella rubella HOM05D003114 ORTHO05D003519 4.8e-21 105.5 77 72.7
FAN20G2585 Fragaria x ananassa HOM05D003114 ORTHO05D003519 4.8e-21 105.5 64 81.2
CARHR037120 Cardamine hirsuta HOM05D003114 ORTHO05D003519 6.3e-21 105.1 77 72.7
MELO3C003892.2 Cucumis melo HOM05D003114 ORTHO05D003519 6.3e-21 105.1 70 77.1
CsaV3_3G044820 Cucumis sativus L. HOM05D003114 ORTHO05D003519 6.3e-21 105.1 70 77.1
DCAR_020951 Daucus carota HOM05D003114 ORTHO05D003519 6.3e-21 105.1 74 73.0
Nn5g29441 Nelumbo nucifera HOM05D003114 ORTHO05D003519 6.3e-21 105.1 77 70.1
Nn6g32173 Nelumbo nucifera HOM05D003114 ORTHO05D003519 8.2e-21 104.8 70 71.4
RcHm_v2.0_Chr6g0300281 Rosa chinensis HOM05D003114 ORTHO05D003519 8.2e-21 104.8 70 74.3
Sed0016520 Sechium edule HOM05D003114 ORTHO05D003519 8.2e-21 104.8 74 74.3
GSVIVG01009623001 Vitis vinifera HOM05D003114 ORTHO05D003519 8.2e-21 104.8 70 74.3
MD00G1038900 Malus domestica HOM05D003114 ORTHO05D003519 1.1e-20 104.4 70 75.7
Oeu009593.2 Olea europaea HOM05D003114 ORTHO05D003519 1.1e-20 104.4 70 74.3
Oeu015606.1 Olea europaea HOM05D003114 ORTHO05D003519 1.1e-20 104.4 74 74.3
unitig_899.g15621 Utricularia gibba HOM05D003114 ORTHO05D003519 1.1e-20 104.4 64 81.2
CANSAT21G1752 Cannabis sativa HOM05D003114 ORTHO05D003519 1.4e-20 104.0 70 78.6
Glyma.04G034700 Glycine max HOM05D003114 ORTHO05D003519 1.4e-20 104.0 74 70.3
QL02p007130 Quercus lobata HOM05D003114 ORTHO05D003519 1.4e-20 104.0 71 77.5
TWI12G1412 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 1.4e-20 104.0 70 75.7
Aqoxy5G01744 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 1.8e-20 103.6 70 75.7
BcaB07g33828 Brassica carinata HOM05D003114 ORTHO05D003519 1.8e-20 103.6 77 71.4
BcaC08g42958 Brassica carinata HOM05D003114 ORTHO05D003519 1.8e-20 103.6 77 71.4
A10p06300 Brassica napus HOM05D003114 ORTHO05D003519 1.8e-20 103.6 77 71.4
C06p01990 Brassica napus HOM05D003114 ORTHO05D003519 1.8e-20 103.6 77 71.4
BraA10t42896Z Brassica rapa HOM05D003114 ORTHO05D003519 1.8e-20 103.6 77 71.4
CiPaw.15G069400 Carya illinoinensis HOM05D003114 ORTHO05D003519 1.8e-20 103.6 70 75.7
Lalb_Chr22g0355331 Lupinus albus HOM05D003114 ORTHO05D003519 1.8e-20 103.6 85 67.1
PSO541G3592 Papaver somniferum HOM05D003114 ORTHO05D003519 1.8e-20 103.6 77 70.1
PSO675G2900 Papaver somniferum HOM05D003114 ORTHO05D003519 1.8e-20 103.6 77 70.1
SGA_v2.0_scaffold14G07047 Striga asiatica HOM05D003114 ORTHO05D003519 1.8e-20 103.6 74 68.9
Thhalv10011225m.g Eutrema salsugineum HOM05D003114 ORTHO05D003519 2.4e-20 103.2 77 70.1
Nitab4.5_0002940g0050 Nicotiana tabacum HOM05D003114 ORTHO05D003519 2.4e-20 103.2 74 70.3
TPR.G15746 Trifolium pratense HOM05D003114 ORTHO05D003519 2.4e-20 103.2 70 75.7
FAN27G1632 Fragaria x ananassa HOM05D003114 ORTHO05D003519 3.1e-20 102.8 64 79.7
Medtr1g021680 Medicago truncatula HOM05D003114 ORTHO05D003519 3.1e-20 102.8 70 75.7
Sc07g0007470 Simmondsia chinensis HOM05D003114 ORTHO05D003519 3.1e-20 102.8 70 72.9
ATR0733G144 Amborella trichopoda HOM05D003114 ORTHO05D003519 4.1e-20 102.4 70 72.9
CANSAT25G1109 Cannabis sativa HOM05D003114 ORTHO05D003519 4.1e-20 102.4 70 77.1
Ca_15530_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 4.1e-20 102.4 64 76.6
Lalb_Chr14g0368971 Lupinus albus HOM05D003114 ORTHO05D003519 5.3e-20 102.1 70 74.3
Medtr3g111590 Medicago truncatula HOM05D003114 ORTHO05D003519 5.3e-20 102.1 64 76.6
Sp1g34560 Schrenkiella parvula HOM05D003114 ORTHO05D003519 5.3e-20 102.1 77 70.1
Nitab4.5_0008571g0020 Nicotiana tabacum HOM05D003114 ORTHO05D003519 7.0e-20 101.7 73 69.9
Lj4C782G7 Lonicera japonica HOM05D003114 ORTHO05D003519 9.1e-20 101.3 73 71.2
HPP92_017781 Vanilla planifolia HOM05D003114 ORTHO05D003519 9.1e-20 101.3 70 72.9
TAR381G0473 Trochodendron aralioides HOM05D003114 ORTHO05D003519 2.0e-19 100.1 70 72.9
Phvul.009G055500 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 2.6e-19 99.8 69 72.5
CAN.G389.2 Capsicum annuum HOM05D003114 ORTHO05D003519 3.5e-19 99.4 70 70.0
ECA232G2779 Erigeron canadensis HOM05D003114 ORTHO05D003519 3.5e-19 99.4 74 67.6
MBI16_g36197_MAGBIO Magnolia biondii HOM05D003114 ORTHO05D003519 5.9e-19 98.6 69 68.1
Lj1g0027709 Lotus japonicus HOM05D003114 ORTHO05D003519 7.7e-19 98.2 70 71.4
Sopen07g012830 Solanum pennellii HOM05D003114 ORTHO05D003519 7.7e-19 98.2 74 66.2
Aa31sc119G20 Aethionema arabicum HOM05D003114 ORTHO05D003519 1.0e-18 97.8 103 56.3
Migut.N02678 Erythranthe guttata HOM05D003114 ORTHO05D003519 1.0e-18 97.8 74 63.5
PGR031G3129 Punica granatum HOM05D003114 ORTHO05D003519 1.0e-18 97.8 64 78.1
Aqoxy6G00963 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 3.8e-18 95.9 74 64.9
PSO700G0395 Papaver somniferum HOM05D003114 ORTHO05D003519 3.8e-18 95.9 70 67.1
PSO170G0663 Papaver somniferum HOM05D003114 ORTHO05D003519 5.0e-18 95.5 70 65.7
HanXRQChr16g0507961 Helianthus annuus HOM05D003114 ORTHO05D003519 8.5e-18 94.7 74 63.5
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 1.5e-17 94.0 77 63.6
MD08G1038000 Malus domestica HOM05D003114 ORTHO05D003519 1.5e-17 94.0 64 75.0
HPP92_006943 Vanilla planifolia HOM05D003114 ORTHO05D003519 1.5e-17 94.0 70 65.7
Lsat_1_v5_gn_4_122980 Lactuca sativa HOM05D003114 ORTHO05D003519 1.9e-17 93.6 73 63.0
Os11g0276000 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 7.2e-17 91.7 70 62.9
CDE07G1354 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 9.4e-17 91.3 64 68.8
Os03g0625700 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 9.4e-17 91.3 72 61.1
Zm00001eb051220 Zea mays HOM05D003114 ORTHO05D003519 1.6e-16 90.5 72 61.1
SEGI_02474 Sequoiadendron giganteum HOM05D003114 ORTHO05D003519 3.6e-16 89.4 73 61.6
CDE04G0236 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 1.4e-15 87.4 73 56.2
Peaxi162Scf01340g00219 Petunia axillaris HOM05D003114 ORTHO05D003519 1.8e-15 87.0 74 60.8
Zm00001eb168790 Zea mays HOM05D003114 ORTHO05D003519 1.8e-15 87.0 70 60.0
Gohir.A05G260500 Gossypium hirsutum HOM05D003114 ORTHO05D003519 2.3e-15 86.7 70 61.4
Mapoly0013s0072 Marchantia polymorpha HOM05D003114 ORTHO05D003519 3.3e-14 82.8 64 62.5
Pp3c11_22450 Physcomitrium patens HOM05D003114 ORTHO05D003519 4.8e-13 79.0 73 54.8
SMO117G0063 Selaginella moellendorffii HOM05D003114 ORTHO05D003519 4.8e-13 79.0 73 54.8
AagrBONN_evm.TU.Sc2ySwM_228.1666 Anthoceros agrestis HOM05D003114 ORTHO05D003519 8.2e-13 78.2 69 55.1
AagrBONN_evm.TU.Sc2ySwM_228.1675 Anthoceros agrestis HOM05D003114 ORTHO05D003519 8.2e-13 78.2 69 55.1
arahy.Tifrunner.gnm1.ann1.06HR6X Arachis hypogaea HOM05D003114 ORTHO05D003519 3.1e-12 76.3 54 72.2
arahy.Tifrunner.gnm1.ann1.I3NIKD Arachis hypogaea HOM05D003114 ORTHO05D003519 3.1e-12 76.3 54 72.2
Haze_05735 Corylus avellana HOM05D009031 ORTHO05D000167 7.7e-11 71.6 83 41.0
Haze_22248 Corylus avellana HOM05D009031 ORTHO05D024892 1.7e-10 70.5 76 38.2
Cfa022932 Carpinus fangiana HOM05D009031 ORTHO05D000167 8.5e-10 68.2 74 43.2
CSS0049055 Camellia sinensis var. sinensis HOM05D003114 ORTHO05D003519 9.4e-09 64.7 55 65.5
Haze_23484 Corylus avellana HOM05D062968 ORTHO05D016203 1.6e-08 63.9 72 45.8
Haze_18233 Corylus avellana HOM05D009031 ORTHO05D000167 2.1e-08 63.5 75 37.3
Haze_25402 Corylus avellana HOM05D003114 ORTHO05D003519 2.7e-08 63.2 64 57.8
CBR_g48206 Chara braunii HOM05D003114 ORTHO05D003519 1.4e-07 60.8 63 47.6
Haze_05522 Corylus avellana HOM05D009031 ORTHO05D000167 3.0e-07 59.7 65 44.6
Haze_05932 Corylus avellana HOM05D009031 ORTHO05D000167 2.0e-06 57.0 83 36.1
Haze_13888 Corylus avellana HOM05D009031 ORTHO05D000167 3.4e-06 56.2 82 34.1
Psat0s2724g0040 Pisum sativum HOM05D003114 ORTHO05D003519 3.4e-06 56.2 36 75.0
Haze_06429 Corylus avellana HOM05D009031 ORTHO05D000167 4.4e-06 55.8 91 31.9


User provided reference genes

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