Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002127 Carpinus fangiana HOM05D000215 ORTHO05D124180 8.2e-43 176.8 98 100.0
Cfa017058 Carpinus fangiana HOM05D000215 ORTHO05D002239 1.3e-32 142.9 97 79.4
Haze_21155 Corylus avellana HOM05D000215 ORTHO05D002239 1.3e-32 142.9 97 79.4
CiPaw.09G219100 Carya illinoinensis HOM05D000215 ORTHO05D002239 7.4e-28 127.1 97 70.1
QL07p032599 Quercus lobata HOM05D000215 ORTHO05D002239 2.5e-23 112.1 97 62.9
TWI77G0030 Tripterygium wilfordii HOM05D000215 ORTHO05D002239 1.1e-20 103.2 98 59.2
CANSAT35G0758 Cannabis sativa HOM05D000215 ORTHO05D002239 4.4e-20 101.3 97 56.7
ClCG04G006430 Citrullus lanatus HOM05D000215 ORTHO05D002239 5.7e-20 100.9 97 53.6
Manes.09G116300 Manihot esculenta HOM05D000215 ORTHO05D002239 9.7e-20 100.1 97 56.7
Manes.08G173500 Manihot esculenta HOM05D000215 ORTHO05D002239 2.2e-19 99.0 97 54.6
MD12G1185600 Malus domestica HOM05D000215 ORTHO05D002239 4.8e-19 97.8 95 56.8
TWI74G1010 Tripterygium wilfordii HOM05D000215 ORTHO05D002239 4.8e-19 97.8 98 57.1
Dinv25323 Davidia involucrata HOM05D000215 ORTHO05D002239 1.8e-18 95.9 97 56.7
SalBow5G2526 Salvia bowleyana HOM05D000215 ORTHO05D002239 3.1e-18 95.1 97 54.6
Sed0009880 Sechium edule HOM05D000215 ORTHO05D002239 3.1e-18 95.1 83 57.8
CSS0030349 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002239 7.0e-18 94.0 97 57.7
CsaV3_4G027070 Cucumis sativus L. HOM05D000215 ORTHO05D002239 7.0e-18 94.0 98 52.0
FvH4_5g29050 Fragaria vesca HOM05D000215 ORTHO05D002239 7.0e-18 94.0 82 59.8
FAN18G3799 Fragaria x ananassa HOM05D000215 ORTHO05D002239 7.0e-18 94.0 82 59.8
CSS0023975 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002239 9.1e-18 93.6 97 56.7
Dinv11383 Davidia involucrata HOM05D000215 ORTHO05D002239 9.1e-18 93.6 97 53.6
PGR004G2249 Punica granatum HOM05D000215 ORTHO05D002239 9.1e-18 93.6 95 52.6
Sc20g0006840 Simmondsia chinensis HOM05D000215 ORTHO05D002239 9.1e-18 93.6 84 60.7
MELO3C025205.2 Cucumis melo HOM05D000215 ORTHO05D002239 1.6e-17 92.8 98 51.0
Nitab4.5_0001694g0010 Nicotiana tabacum HOM05D000215 ORTHO05D002239 1.6e-17 92.8 97 54.6
PSO170G4222 Papaver somniferum HOM05D000215 ORTHO05D002239 1.6e-17 92.8 97 52.6
Rhsim05G0229300 Rhododendron simsii HOM05D000215 ORTHO05D002239 1.6e-17 92.8 97 52.6
RcHm_v2.0_Chr3g0460861 Rosa chinensis HOM05D000215 ORTHO05D002239 1.6e-17 92.8 97 49.5
Potri.016G134000 Populus trichocarpa HOM05D000215 ORTHO05D002239 2.6e-17 92.0 97 53.6
Solyc09g018230.1 Solanum lycopersicum HOM05D000215 ORTHO05D002239 2.6e-17 92.0 97 53.6
Sed0009941 Sechium edule HOM05D000215 ORTHO05D002239 4.5e-17 91.3 97 45.4
VMungo0331G1803 Vigna mungo HOM05D000215 ORTHO05D002239 5.9e-17 90.9 99 53.5
CSS0011726 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002239 7.7e-17 90.5 97 55.7
Cpa.g.sc86.33 Carica papaya HOM05D000215 ORTHO05D002239 7.7e-17 90.5 98 55.1
FAN13G0611 Fragaria x ananassa HOM05D000215 ORTHO05D002239 7.7e-17 90.5 82 57.3
Oeu024009.1 Olea europaea HOM05D000215 ORTHO05D002239 7.7e-17 90.5 97 49.5
Sopen09g010990 Solanum pennellii HOM05D000215 ORTHO05D002239 7.7e-17 90.5 97 52.6
PSO017G6701 Papaver somniferum HOM05D000215 ORTHO05D002239 1.0e-16 90.1 97 51.5
Potri.006G107600 Populus trichocarpa HOM05D000215 ORTHO05D002239 1.0e-16 90.1 95 55.8
EL10Ac7g17067 Beta vulgaris HOM05D000215 ORTHO05D002239 1.3e-16 89.7 81 59.3
COL.COLO4_16556 Corchorus olitorius HOM05D000215 ORTHO05D002239 1.3e-16 89.7 98 50.0
Nitab4.5_0003064g0010 Nicotiana tabacum HOM05D000215 ORTHO05D002239 1.3e-16 89.7 97 53.6
Sabra04G0151600 Salix brachista HOM05D000215 ORTHO05D002239 1.7e-16 89.4 97 51.5
Duzib151G1209 Durio zibethinus HOM05D000215 ORTHO05D002239 2.2e-16 89.0 98 50.0
Oeu024008.1 Olea europaea HOM05D000215 ORTHO05D002239 2.2e-16 89.0 97 51.5
Oeu057995.1 Olea europaea HOM05D000215 ORTHO05D002239 2.2e-16 89.0 97 51.5
Atru.chr8.2380 Acer truncatum HOM05D000215 ORTHO05D002239 2.9e-16 88.6 99 53.5
Ah.15g090180 Amaranthus hybridus HOM05D000131 ORTHO05D002239 2.9e-16 88.6 87 55.2
Migut.J00059 Erythranthe guttata HOM05D000215 ORTHO05D002239 2.9e-16 88.6 97 50.5
Prupe.6G290800 Prunus persica HOM05D000215 ORTHO05D002239 2.9e-16 88.6 95 53.7
Thecc.04G154300 Theobroma cacao HOM05D000215 ORTHO05D002239 3.8e-16 88.2 98 49.0
FAN08G1132 Fragaria x ananassa HOM05D000215 ORTHO05D002239 5.0e-16 87.8 82 56.1
Nn2g10344 Nelumbo nucifera HOM05D000215 ORTHO05D002239 5.0e-16 87.8 97 49.5
Phvul.L001610 Phaseolus vulgaris HOM05D000215 ORTHO05D002239 6.5e-16 87.4 99 52.5
Actinidia29045 Actinidia chinensis HOM05D000215 ORTHO05D002239 8.5e-16 87.0 78 62.8
GSVIVG01030205001 Vitis vinifera HOM05D000215 ORTHO05D002239 8.5e-16 87.0 97 47.4
Hma1.2p1_1052F.1_g252330 Hydrangea macrophylla HOM05D000215 ORTHO05D002239 1.5e-15 86.3 92 52.2
PGSC0003DMG400027759 Solanum tuberosum HOM05D000215 ORTHO05D002239 1.5e-15 86.3 100 51.0
Aqoxy4G02365 Aquilegia oxysepala HOM05D000215 ORTHO05D002239 1.9e-15 85.9 83 57.8
Sabra06G0083700 Salix brachista HOM05D000215 ORTHO05D002239 2.5e-15 85.5 97 50.5
Lalb_Chr13g0291871 Lupinus albus HOM05D000215 ORTHO05D002239 4.2e-15 84.7 97 50.5
Ah.08g209670 Amaranthus hybridus HOM05D000215 ORTHO05D002239 5.5e-15 84.3 83 54.2
Gohir.A02G004300 Gossypium hirsutum HOM05D000215 ORTHO05D002239 7.2e-15 84.0 98 46.9
Gohir.D02G004700 Gossypium hirsutum HOM05D000215 ORTHO05D002239 7.2e-15 84.0 98 46.9
Gorai.005G005300 Gossypium raimondii HOM05D000215 ORTHO05D002239 7.2e-15 84.0 98 46.9
TPR.G5018 Trifolium pratense HOM05D000215 ORTHO05D002239 7.2e-15 84.0 99 49.5
Glyma.03G036700 Glycine max HOM05D000215 ORTHO05D002239 9.4e-15 83.6 99 47.5
DCAR_028911 Daucus carota HOM05D000215 ORTHO05D002239 1.2e-14 83.2 98 50.0
Glyma.01G131800 Glycine max HOM05D000215 ORTHO05D002239 1.2e-14 83.2 78 56.4
Gohir.D10G117300 Gossypium hirsutum HOM05D000215 ORTHO05D002239 1.2e-14 83.2 99 50.5
MSTRG.5513 Avicennia marina HOM05D000215 ORTHO05D002239 1.6e-14 82.8 97 50.5
Gorai.011G129200 Gossypium raimondii HOM05D000215 ORTHO05D002239 1.6e-14 82.8 99 50.5
Lj3g0005426 Lotus japonicus HOM05D000215 ORTHO05D002239 2.1e-14 82.4 104 46.2
Psat7g230280 Pisum sativum HOM05D000215 ORTHO05D002239 2.1e-14 82.4 99 47.5
Medtr4g028960 Medicago truncatula HOM05D000215 ORTHO05D002239 2.7e-14 82.0 100 49.0
SGA_v2.0_scaffold85G26647 Striga asiatica HOM05D000215 ORTHO05D002239 2.7e-14 82.0 83 56.6
Gohir.A10G149500 Gossypium hirsutum HOM05D000215 ORTHO05D002239 3.6e-14 81.6 99 49.5
Lsat_1_v5_gn_5_150301 Lactuca sativa HOM05D000215 ORTHO05D002239 3.6e-14 81.6 77 58.4
Peaxi162Scf00732g00425 Petunia axillaris HOM05D000215 ORTHO05D002239 3.6e-14 81.6 98 51.0
Ciclev10011217m.g Citrus clementina HOM05D000215 ORTHO05D002239 8.0e-14 80.5 98 50.0
Ca_19767_v3 Cicer arietinum L. HOM05D000215 ORTHO05D002239 2.3e-13 79.0 99 47.5
Lj2C61T5 Lonicera japonica HOM05D000215 ORTHO05D002239 2.3e-13 79.0 78 52.6
unitig_699.g19593 Utricularia gibba HOM05D000215 ORTHO05D002239 6.8e-13 77.4 97 45.4
TAR623G0186 Trochodendron aralioides HOM05D000215 ORTHO05D002239 1.5e-12 76.3 94 48.9
Eucgr.K01275 Eucalyptus grandis HOM05D000215 ORTHO05D002239 3.4e-12 75.1 88 48.9
HanXRQChr15g0464951 Helianthus annuus HOM05D000215 ORTHO05D002239 3.4e-12 75.1 77 54.5
ECA248G3923 Erigeron canadensis HOM05D000215 ORTHO05D002239 4.4e-12 74.7 77 54.5
Cc06_g00510 Coffea canephora HOM05D000215 ORTHO05D002239 5.7e-12 74.3 90 46.7
unitig_26.g8960 Utricularia gibba HOM05D000215 ORTHO05D002239 2.8e-11 72.0 94 41.5
AL6G10200 Arabidopsis lyrata HOM05D000215 ORTHO05D002239 8.3e-11 70.5 93 44.1
AT5G01830 Arabidopsis thaliana HOM05D000215 ORTHO05D002239 1.1e-10 70.1 93 44.1
HPP92_017921 Vanilla planifolia HOM05D000215 ORTHO05D002239 1.1e-10 70.1 83 47.0
ATR0681G359 Amborella trichopoda HOM05D000215 ORTHO05D002239 1.2e-09 66.6 83 45.8
THA.LOC104816167 Tarenaya hassleriana HOM05D000215 ORTHO05D002239 3.5e-09 65.1 104 41.3
Zm00001eb149420 Zea mays HOM05D000215 ORTHO05D002239 3.5e-09 65.1 95 38.9
Zm00001eb368740 Zea mays HOM05D000215 ORTHO05D002239 4.5e-09 64.7 95 36.8
BcaC06g36184 Brassica carinata HOM05D000215 ORTHO05D002239 7.7e-09 63.9 98 41.8
C07p06800 Brassica napus HOM05D000215 ORTHO05D002239 7.7e-09 63.9 98 41.8
BolC7t41101H Brassica oleracea HOM05D000215 ORTHO05D002239 7.7e-09 63.9 98 41.8
Carub.0001s3832 Capsella rubella HOM05D000215 ORTHO05D002239 7.7e-09 63.9 98 41.8
MBI03_g21545_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D002239 7.7e-09 63.9 97 37.1
SEGI_31221 Sequoiadendron giganteum HOM05D000215 ORTHO05D002239 7.7e-09 63.9 83 36.1
A07p04290 Brassica napus HOM05D000215 ORTHO05D002239 1.3e-08 63.2 98 41.8
AUR62029698 Chenopodium quinoa HOM05D000215 ORTHO05D002239 1.3e-08 63.2 57 57.9
Os01g0823900 Oryza sativa ssp. japonica HOM05D000215 ORTHO05D002239 1.7e-08 62.8 83 39.8
BcaB03g16408 Brassica carinata HOM05D000215 ORTHO05D002239 2.9e-08 62.0 98 40.8
Sp3g29940 Schrenkiella parvula HOM05D000215 ORTHO05D002239 2.9e-08 62.0 98 41.8
Aa31LG5G11560 Aethionema arabicum HOM05D000215 ORTHO05D002239 3.8e-08 61.6 100 40.0
BraA07t28220Z Brassica rapa HOM05D000215 ORTHO05D002239 3.8e-08 61.6 98 40.8
Thhalv10022583m.g Eutrema salsugineum HOM05D000215 ORTHO05D002239 3.8e-08 61.6 95 41.1
CARHR212180 Cardamine hirsuta HOM05D000215 ORTHO05D002239 6.5e-08 60.8 103 36.9
SEGI_27013 Sequoiadendron giganteum HOM05D000215 ORTHO05D002239 8.5e-08 60.5 75 40.0
Pp3c24_4740 Physcomitrium patens HOM05D000215 ORTHO05D008904 1.2e-06 56.6 91 34.1
Zm00001eb290550 Zea mays HOM05D000215 ORTHO05D002239 2.7e-06 55.5 97 34.0
Pp3c20_16680 Physcomitrium patens HOM05D000215 ORTHO05D008904 3.6e-06 55.1 83 36.1


User provided reference genes

Program Settings