Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 3.9e-199 698.0 366 100.0
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 1.8e-172 609.4 343 88.3
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 6.8e-167 590.9 324 96.0
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 2.6e-166 589.0 322 90.4
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 7.5e-166 587.4 333 86.8
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 7.5e-166 587.4 322 89.8
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 1.7e-165 586.3 329 86.6
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 3.7e-165 585.1 331 87.3
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 4.9e-165 584.7 336 85.1
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 1.1e-164 583.6 323 87.9
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 1.1e-164 583.6 323 87.9
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 2.4e-164 582.4 329 86.6
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 5.4e-164 581.3 331 86.1
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 1.6e-163 579.7 338 84.6
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 1.6e-163 579.7 322 87.9
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 3.5e-163 578.6 331 87.0
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 1.0e-162 577.0 334 84.4
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 1.0e-162 577.0 328 87.2
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 1.0e-162 577.0 332 84.9
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.3e-162 576.6 322 87.3
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 1.3e-162 576.6 331 86.4
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.3e-162 576.6 337 84.6
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 2.3e-162 575.9 318 88.4
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 2.3e-162 575.9 330 86.4
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.3e-162 575.9 330 86.4
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 3.9e-162 575.1 334 85.3
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.1e-161 573.5 330 86.1
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 1.5e-161 573.2 321 87.9
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 2.5e-161 572.4 330 85.8
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 5.6e-161 571.2 324 87.3
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 9.5e-161 570.5 366 77.6
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.6e-160 569.7 330 85.8
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 2.1e-160 569.3 328 86.0
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 6.2e-160 567.8 326 83.7
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 1.8e-159 566.2 321 86.3
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 3.1e-159 565.5 330 83.3
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 5.2e-159 564.7 322 85.7
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 5.2e-159 564.7 318 86.5
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.2e-158 563.5 326 85.0
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.2e-158 563.5 333 84.1
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 1.5e-158 563.1 328 83.5
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 3.4e-158 562.0 335 81.8
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 1.3e-157 560.1 330 82.4
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 1.7e-157 559.7 328 82.3
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 2.9e-157 558.9 332 81.9
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 2.9e-157 558.9 326 84.0
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 2.9e-157 558.9 322 84.8
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 1.9e-156 556.2 324 84.3
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 7.0e-156 554.3 322 84.2
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 9.2e-156 553.9 334 82.3
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.2e-155 553.5 334 82.3
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 1.6e-155 553.1 317 85.2
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.7e-155 552.4 330 81.8
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 3.5e-155 552.0 364 76.9
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 3.5e-155 552.0 327 83.2
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 6.0e-155 551.2 322 81.7
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 7.8e-155 550.8 327 82.6
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 1.0e-154 550.4 314 84.4
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 3.0e-154 548.9 329 82.1
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.1e-153 547.0 335 80.0
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 1.5e-153 546.6 324 81.2
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 1.9e-153 546.2 326 81.6
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 5.6e-153 544.7 323 81.4
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 9.5e-153 543.9 323 81.7
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 6.2e-152 541.2 308 85.4
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 6.8e-151 537.7 323 80.2
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.5e-150 536.6 323 80.5
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 2.6e-150 535.8 322 81.7
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 9.8e-150 533.9 327 81.3
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 2.9e-149 532.3 323 78.6
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 1.1e-148 530.4 330 78.2
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 1.1e-148 530.4 325 79.7
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 5.4e-148 528.1 320 80.9
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 1.6e-147 526.6 328 78.7
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 4.6e-147 525.0 325 78.5
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 1.5e-145 520.0 320 79.1
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 2.8e-144 515.8 325 78.2
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 4.7e-144 515.0 326 79.1
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 6.2e-144 514.6 327 78.9
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 1.1e-143 513.8 326 78.8
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 1.4e-143 513.5 320 77.5
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 4.0e-143 511.9 325 77.5
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 4.0e-143 511.9 325 75.1
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 2.6e-142 509.2 290 85.5
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 3.4e-142 508.8 326 76.4
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 4.4e-142 508.4 326 77.0
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 4.4e-142 508.4 326 76.4
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.7e-141 506.5 294 84.0
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 6.4e-141 504.6 326 76.1
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 8.4e-141 504.2 322 77.0
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 1.9e-140 503.1 337 72.4
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 3.5e-139 498.8 322 76.1
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 7.8e-139 497.7 329 74.2
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 7.8e-139 497.7 296 82.8
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 1.7e-138 496.5 324 75.3
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.9e-137 493.0 266 89.8
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 8.1e-136 487.6 328 74.1
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 1.8e-135 486.5 266 88.7
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 7.6e-134 481.1 353 68.3
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 3.9e-130 468.8 342 71.3
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 2.5e-129 466.1 319 76.2
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 5.6e-129 464.9 256 87.5
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 7.3e-129 464.5 255 87.8
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 6.2e-128 461.5 335 69.9
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 1.5e-126 456.8 287 78.0
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 9.3e-124 447.6 232 93.5
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 1.0e-122 444.1 274 80.7
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.2e-118 430.6 255 82.7
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 4.9e-109 398.7 227 86.3
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 6.0e-107 391.7 326 60.7
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 6.0e-107 391.7 326 60.7
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 1.9e-100 370.2 325 57.8
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 6.7e-82 308.5 207 77.3
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 8.8e-82 308.1 278 62.9
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 1.1e-81 307.8 300 55.0
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 5.9e-78 295.4 213 66.2
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.9e-76 290.4 174 82.8
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 9.4e-68 261.5 147 87.8
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 6.3e-64 248.8 213 60.6
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 5.4e-63 245.7 215 63.3
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.3e-53 214.5 318 44.3
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 5.6e-52 209.1 328 37.5
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 2.8e-51 206.8 176 62.5
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 2.6e-49 200.3 241 47.3
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 1.4e-42 177.9 354 34.7
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 6.8e-42 175.6 114 76.3
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 1.3e-37 161.4 229 48.9
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.5e-36 157.9 109 70.6
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 6.2e-35 152.5 320 36.2
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 5.4e-23 112.8 249 36.1
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 1.1e-18 98.6 57 86.0
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 4.0e-18 96.7 98 54.1
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 8.4e-16 89.0 45 91.1
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 6.0e-14 82.8 55 74.5
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 5.6e-12 76.3 78 52.6
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 9.9e-09 65.5 30 93.3
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 7.1e-07 59.3 41 75.6
Nitab4.5_0016721g0010 Nicotiana tabacum HOM05D002908 ORTHO05D283189 7.9e-06 55.8 68 52.9


User provided reference genes

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