Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 1.0e-108 396.7 198 100.0
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 7.8e-101 370.5 196 93.4
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 4.7e-98 361.3 198 90.4
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 4.4e-88 328.2 200 79.5
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 7.6e-88 327.4 201 81.6
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 9.9e-88 327.0 201 81.6
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 9.9e-88 327.0 200 79.0
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 1.3e-87 326.6 200 81.5
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 2.2e-87 325.9 200 81.5
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 2.2e-87 325.9 200 78.5
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.2e-87 325.9 200 79.5
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 6.4e-87 324.3 200 79.5
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 2.4e-86 322.4 200 78.5
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 3.2e-86 322.0 198 79.3
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 7.1e-86 320.9 200 77.5
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 7.1e-86 320.9 201 80.1
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 7.1e-86 320.9 200 78.5
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 9.3e-86 320.5 196 78.6
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 1.7e-84 316.2 200 78.5
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 5.1e-84 314.7 198 82.3
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 5.1e-84 314.7 198 77.3
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 6.6e-84 314.3 198 78.3
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.4e-81 305.8 189 76.7
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 2.2e-79 299.3 200 72.5
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 8.4e-79 297.4 197 72.6
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 4.2e-78 295.0 195 71.3
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 2.7e-77 292.4 199 71.4
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 7.9e-77 290.8 198 72.2
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.7e-76 289.7 197 70.1
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 3.0e-76 288.9 197 68.0
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 5.1e-76 288.1 194 70.1
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 6.6e-76 287.7 197 69.5
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.1e-75 287.0 198 71.7
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 5.6e-75 284.6 202 69.8
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.1e-74 282.7 197 67.0
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 2.8e-74 282.3 203 71.9
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 4.8e-74 281.6 200 69.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.8e-74 281.6 201 69.7
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 4.8e-74 281.6 201 69.7
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 4.8e-74 281.6 202 68.8
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 4.8e-74 281.6 195 70.3
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.8e-73 279.6 202 69.8
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 2.4e-73 279.3 191 67.5
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.1e-73 278.9 191 67.5
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 5.3e-73 278.1 203 69.5
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 5.3e-73 278.1 191 67.5
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 5.3e-73 278.1 201 69.7
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 6.9e-73 277.7 203 68.5
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 2.0e-72 276.2 203 68.0
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 4.5e-72 275.0 203 68.5
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.8e-72 274.6 198 69.2
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 5.8e-72 274.6 198 69.2
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 9.9e-72 273.9 201 68.7
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 9.9e-72 273.9 201 68.7
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 1.3e-71 273.5 194 66.0
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.2e-71 272.7 203 68.0
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 2.2e-71 272.7 194 64.9
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 4.9e-71 271.6 198 67.2
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.4e-71 271.2 198 68.2
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 1.1e-70 270.4 203 66.5
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.4e-70 270.0 200 66.5
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 2.4e-70 269.2 200 66.5
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.4e-70 269.2 199 66.8
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 2.4e-70 269.2 198 66.7
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.2e-70 268.9 198 66.7
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.2e-70 268.9 198 66.7
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 2.1e-69 266.2 203 65.5
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.7e-69 265.8 193 68.9
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 3.5e-69 265.4 200 66.0
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 3.5e-69 265.4 200 66.0
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 4.6e-69 265.0 194 65.5
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 6.0e-69 264.6 194 69.1
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 6.0e-69 264.6 198 65.2
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.9e-69 264.2 198 65.7
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.0e-68 263.8 192 68.2
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.0e-68 263.8 199 65.8
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.8e-68 263.1 199 65.3
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 2.3e-68 262.7 201 66.7
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 3.0e-68 262.3 192 68.8
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 6.7e-68 261.2 199 64.8
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 1.9e-67 259.6 193 66.3
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 2.5e-67 259.2 194 67.0
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 1.3e-66 256.9 200 63.0
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.1e-65 253.8 188 66.5
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.8e-65 253.1 195 63.1
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.8e-65 253.1 169 71.6
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.4e-65 252.7 225 59.6
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 3.1e-65 252.3 196 65.3
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 4.0e-65 251.9 225 60.0
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.2e-64 250.4 267 52.4
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 2.0e-64 249.6 194 64.4
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 1.3e-63 246.9 231 58.0
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 2.9e-63 245.7 199 63.8
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 3.8e-63 245.4 173 67.1
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 4.9e-63 245.0 224 58.5
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 9.3e-62 240.7 246 53.3
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.6e-61 240.0 228 55.3
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 2.1e-61 239.6 189 62.4
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 2.7e-61 239.2 148 76.4
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 3.5e-61 238.8 195 61.0
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 4.6e-61 238.4 194 61.3
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 2.3e-60 236.1 225 55.6
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 7.4e-59 231.1 195 60.0
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.1e-57 227.3 206 59.7
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.1e-57 227.3 229 54.1
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.8e-57 226.5 143 76.9
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.5e-56 223.4 144 73.6
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 3.4e-56 222.2 195 53.3
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 5.9e-56 221.5 134 77.6
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 8.4e-55 217.6 231 48.9
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 2.5e-54 216.1 231 50.6
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 3.2e-54 215.7 189 52.4
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 7.2e-54 214.5 191 61.3
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 9.3e-54 214.2 228 49.6
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 9.3e-54 214.2 228 50.4
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 1.6e-53 213.4 146 71.9
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.7e-53 212.6 222 50.9
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 6.1e-53 211.5 151 68.2
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 1.6e-50 203.4 250 45.6
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 8.2e-50 201.1 191 55.5
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 1.1e-49 200.7 175 63.4
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.5e-48 196.8 203 51.2
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 3.4e-48 195.7 194 51.5
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.3e-47 193.7 199 48.2
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.3e-47 193.7 199 48.2
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.1e-45 186.4 197 50.8
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.8e-44 183.3 154 59.1
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 1.3e-42 177.2 157 56.7
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.3e-42 177.2 198 50.5
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.7e-42 175.6 196 48.5
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 4.8e-42 175.3 149 57.0
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.8e-41 173.3 195 43.1
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.8e-41 173.3 116 72.4
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.9e-41 171.4 119 65.5
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.0e-40 169.9 114 70.2
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 8.5e-39 164.5 190 46.8
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 4.2e-38 162.2 204 43.1
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.0e-36 157.5 189 45.5
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.3e-36 156.4 115 69.6
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 1.1e-35 154.1 113 65.5
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 3.3e-35 152.5 152 55.3
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 2.8e-34 149.4 110 67.3
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 4.8e-34 148.7 195 36.4
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.3e-31 140.6 118 57.6
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 4.2e-30 135.6 112 59.8
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 4.7e-29 132.1 197 44.7
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 6.1e-29 131.7 82 80.5
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 1.8e-28 130.2 187 42.8
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.3e-27 125.9 86 68.6
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 1.5e-19 100.5 202 29.2
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 4.8e-18 95.5 59 79.7
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.3e-15 87.4 205 28.3
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 3.8e-15 85.9 66 60.6
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.2e-14 82.8 57 70.2
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 1.7e-07 60.5 185 27.6
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.7e-07 60.5 49 55.1
SHI09667 Sapria himalayana HOM05D000105 ORTHO05D000023 2.9e-07 59.7 53 52.8


User provided reference genes

Program Settings