Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001718 Carpinus fangiana HOM05D000236 ORTHO05D022273 2.4e-60 235.3 120 100.0
Haze_16821 Corylus avellana HOM05D000236 ORTHO05D000192 7.9e-56 220.3 120 93.3
Cfa001714 Carpinus fangiana HOM05D000236 ORTHO05D000192 6.7e-47 190.7 101 96.0
CiPaw.01G261600 Carya illinoinensis HOM05D000236 ORTHO05D000192 6.1e-32 141.0 102 76.5
CiPaw.02G167200 Carya illinoinensis HOM05D000236 ORTHO05D000192 1.0e-31 140.2 101 75.2
QL08p052292 Quercus lobata HOM05D000236 ORTHO05D000192 3.9e-31 138.3 100 74.0
QL08p052426 Quercus lobata HOM05D000236 ORTHO05D022273 5.0e-26 121.3 99 67.7
Nn1g01217 Nelumbo nucifera HOM05D000236 ORTHO05D000192 4.4e-22 108.2 101 61.4
QL08p052346 Quercus lobata HOM05D000236 ORTHO05D022273 7.5e-22 107.5 93 63.4
Nn4g26414 Nelumbo nucifera HOM05D000236 ORTHO05D000192 2.2e-21 105.9 101 60.4
CANSAT56G2216 Cannabis sativa HOM05D000236 ORTHO05D000192 4.8e-21 104.8 101 53.5
Thecc.01G375700 Theobroma cacao HOM05D000236 ORTHO05D000192 1.2e-19 100.1 101 57.4
TAR374G1224 Trochodendron aralioides HOM05D000236 ORTHO05D000192 1.2e-19 100.1 102 56.9
TAR375G1054 Trochodendron aralioides HOM05D000236 ORTHO05D000192 1.2e-19 100.1 101 57.4
ClCG05G002200 Citrullus lanatus HOM05D000236 ORTHO05D000192 2.0e-19 99.4 105 53.3
Glyma.18G220900 Glycine max HOM05D000236 ORTHO05D000192 2.0e-19 99.4 103 54.4
QL08p052384 Quercus lobata HOM05D013964 ORTHO05D022273 2.7e-19 99.0 73 72.6
Ciclev10021116m.g Citrus clementina HOM05D000236 ORTHO05D000192 3.5e-19 98.6 104 58.7
Lalb_Chr13g0291721 Lupinus albus HOM05D000236 ORTHO05D000192 1.0e-18 97.1 101 53.5
TAR104G0003 Trochodendron aralioides HOM05D000236 ORTHO05D000192 1.0e-18 97.1 98 57.1
COL.COLO4_12552 Corchorus olitorius HOM05D000236 ORTHO05D000192 1.3e-18 96.7 105 54.3
Duzib133G1460 Durio zibethinus HOM05D000236 ORTHO05D000192 1.7e-18 96.3 101 57.4
Phvul.008G076100 Phaseolus vulgaris HOM05D000236 ORTHO05D000192 1.7e-18 96.3 101 55.4
Lalb_Chr07g0189761 Lupinus albus HOM05D000236 ORTHO05D000192 1.5e-17 93.2 101 52.5
Psat3g115640 Pisum sativum HOM05D000236 ORTHO05D000192 1.5e-17 93.2 99 54.5
Dinv37751 Davidia involucrata HOM05D000236 ORTHO05D000192 2.5e-17 92.4 99 53.5
Gohir.D08G155300 Gossypium hirsutum HOM05D000236 ORTHO05D000192 2.5e-17 92.4 100 55.0
Gorai.004G161300 Gossypium raimondii HOM05D000236 ORTHO05D000192 2.5e-17 92.4 100 55.0
Lj1g0017033 Lotus japonicus HOM05D000236 ORTHO05D000192 2.5e-17 92.4 102 54.9
Duzib138G0464 Durio zibethinus HOM05D000236 ORTHO05D000192 3.2e-17 92.0 101 55.4
GSVIVG01027617001 Vitis vinifera HOM05D000236 ORTHO05D000192 4.2e-17 91.7 101 52.5
Gohir.D11G085500 Gossypium hirsutum HOM05D000236 ORTHO05D000192 5.5e-17 91.3 102 55.9
Lalb_Chr12g0208291 Lupinus albus HOM05D000236 ORTHO05D000192 7.2e-17 90.9 101 49.5
Cpa.g.sc349.2 Carica papaya HOM05D000236 ORTHO05D000192 1.2e-16 90.1 101 52.5
Gorai.007G091400 Gossypium raimondii HOM05D000236 ORTHO05D000192 1.6e-16 89.7 102 54.9
Ca_07820_v3 Cicer arietinum L. HOM05D000236 ORTHO05D000192 2.7e-16 89.0 98 52.0
Glyma.09G268900 Glycine max HOM05D000236 ORTHO05D000192 2.7e-16 89.0 103 49.5
Sed0023301 Sechium edule HOM05D000236 ORTHO05D000192 3.6e-16 88.6 108 48.1
MBI04_g45972_MAGBIO Magnolia biondii HOM05D000236 ORTHO05D000192 8.0e-16 87.4 101 52.5
Aqoxy7G00615 Aquilegia oxysepala HOM05D000236 ORTHO05D000192 1.0e-15 87.0 101 51.5
Potri.014G070000 Populus trichocarpa HOM05D000236 ORTHO05D000192 1.4e-15 86.7 102 55.9
TPR.G28856 Trifolium pratense HOM05D000236 ORTHO05D000192 1.4e-15 86.7 98 51.0
Manes.01G265500 Manihot esculenta HOM05D000236 ORTHO05D000192 2.3e-15 85.9 99 53.5
Manes.05G044900 Manihot esculenta HOM05D000236 ORTHO05D000192 2.3e-15 85.9 98 53.1
VMungo1383G3723 Vigna mungo HOM05D000236 ORTHO05D000192 2.3e-15 85.9 104 51.0
Gohir.A11G081000 Gossypium hirsutum HOM05D000236 ORTHO05D000192 3.0e-15 85.5 102 53.9
arahy.Tifrunner.gnm1.ann1.USAE67 Arachis hypogaea HOM05D000236 ORTHO05D000192 6.8e-15 84.3 101 50.5
Medtr7g074935 Medicago truncatula HOM05D000236 ORTHO05D000192 6.8e-15 84.3 98 49.0
Sabra02G0115800 Salix brachista HOM05D000236 ORTHO05D000192 1.2e-14 83.6 108 51.9
MBI12_g10750_MAGBIO Magnolia biondii HOM05D000236 ORTHO05D000192 2.0e-14 82.8 100 50.0
QL08p052338 Quercus lobata HOM05D013964 ORTHO05D011886 2.0e-14 82.8 69 65.2
Sabra02G0117600 Salix brachista HOM05D000236 ORTHO05D000192 2.0e-14 82.8 102 53.9
Dinv39066 Davidia involucrata HOM05D000236 ORTHO05D000192 2.6e-14 82.4 103 49.5
Lj3g0023128 Lotus japonicus HOM05D000236 ORTHO05D000192 3.4e-14 82.0 103 48.5
Sabra14G0049600 Salix brachista HOM05D000236 ORTHO05D000192 3.4e-14 82.0 102 54.9
Glyma.03G023500 Glycine max HOM05D000236 ORTHO05D000192 4.4e-14 81.6 103 52.4
MBI04_g45971_MAGBIO Magnolia biondii HOM05D000236 ORTHO05D022273 4.4e-14 81.6 99 49.5
PSO478G0661 Papaver somniferum HOM05D000236 ORTHO05D000192 1.3e-13 80.1 100 47.0
AUR62013631 Chenopodium quinoa HOM05D000236 ORTHO05D000192 2.2e-13 79.3 103 45.6
Potri.002G148600 Populus trichocarpa HOM05D000236 ORTHO05D000192 2.8e-13 79.0 102 52.0
CSS0040906 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 3.7e-13 78.6 99 46.5
CSS0041786 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 3.7e-13 78.6 99 46.5
AUR62004217 Chenopodium quinoa HOM05D000236 ORTHO05D000192 3.7e-13 78.6 103 44.7
CSS0016287 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 1.1e-12 77.0 99 47.5
MELO3C006186.2 Cucumis melo HOM05D000236 ORTHO05D000192 1.1e-12 77.0 106 47.2
Atru.chr5.314 Acer truncatum HOM05D000236 ORTHO05D000192 1.4e-12 76.6 102 48.0
Ca_23853_v3 Cicer arietinum L. HOM05D000236 ORTHO05D000192 1.4e-12 76.6 106 49.1
Hund27348 Selenicereus undatus HOM05D000236 ORTHO05D000192 1.8e-12 76.3 100 45.0
PSO782G0968 Papaver somniferum HOM05D000236 ORTHO05D000192 2.4e-12 75.9 100 46.0
arahy.Tifrunner.gnm1.ann1.Y6JJLD Arachis hypogaea HOM05D000236 ORTHO05D000192 7.0e-12 74.3 102 47.1
arahy.Tifrunner.gnm1.ann1.ZI4JU1 Arachis hypogaea HOM05D000236 ORTHO05D000192 2.0e-11 72.8 105 45.7
Ah.05g174160 Amaranthus hybridus HOM05D000236 ORTHO05D000192 7.7e-11 70.9 103 43.7
HPP92_020664 Vanilla planifolia HOM05D000236 ORTHO05D000192 7.7e-11 70.9 101 52.5
Peaxi162Scf00021g01715 Petunia axillaris HOM05D000236 ORTHO05D000192 2.3e-10 69.3 122 43.4
CsaV3_3G009660 Cucumis sativus L. HOM05D000236 ORTHO05D000192 5.0e-10 68.2 109 44.0
GSVIVG01019937001 Vitis vinifera HOM05D000236 ORTHO05D000192 6.6e-10 67.8 101 46.5
vmacro14035 Vaccinium macrocarpon HOM05D000236 ORTHO05D000192 8.6e-10 67.4 99 45.5
QL12p015380 Quercus lobata HOM05D000236 ORTHO05D000192 1.1e-09 67.0 100 45.0
Rhsim07G0100700 Rhododendron simsii HOM05D000236 ORTHO05D000192 1.1e-09 67.0 99 47.5
Lj8A254T76 Lonicera japonica HOM05D000236 ORTHO05D000192 1.9e-09 66.2 99 47.5
Nitab4.5_0000457g0320 Nicotiana tabacum HOM05D000236 ORTHO05D000192 1.9e-09 66.2 110 42.7
Sc02g0002560 Simmondsia chinensis HOM05D000236 ORTHO05D000192 1.9e-09 66.2 112 42.0
Nitab4.5_0005372g0060 Nicotiana tabacum HOM05D000236 ORTHO05D000192 2.5e-09 65.9 110 42.7
Duzib068G0799 Durio zibethinus HOM05D000236 ORTHO05D000192 4.2e-09 65.1 104 44.2
FvH4_5g00860 Fragaria vesca HOM05D000236 ORTHO05D000192 7.2e-09 64.3 100 43.0
FAN18G0580 Fragaria x ananassa HOM05D000236 ORTHO05D000192 7.2e-09 64.3 100 43.0
CAN.G388.10 Capsicum annuum HOM05D000236 ORTHO05D000192 9.5e-09 63.9 112 45.5
Actinidia14475 Actinidia chinensis HOM05D000236 ORTHO05D000192 1.2e-08 63.5 75 52.0
Glyma.01G143100 Glycine max HOM05D000236 ORTHO05D000192 1.2e-08 63.5 103 44.7
Phvul.010G084600 Phaseolus vulgaris HOM05D000236 ORTHO05D000192 1.2e-08 63.5 111 42.3
Sc23g0003540 Simmondsia chinensis HOM05D000236 ORTHO05D000192 1.6e-08 63.2 114 38.6
Actinidia27431 Actinidia chinensis HOM05D000236 ORTHO05D000192 2.1e-08 62.8 103 42.7
Gorai.004G203700 Gossypium raimondii HOM05D000236 ORTHO05D000192 2.1e-08 62.8 104 45.2
Hma1.2p1_0367F.1_g137120 Hydrangea macrophylla HOM05D000236 ORTHO05D000192 2.1e-08 62.8 99 44.4
Hma1.2p1_3825F.1_g337653 Hydrangea macrophylla HOM05D000236 ORTHO05D000192 2.1e-08 62.8 99 44.4
Sed0019723 Sechium edule HOM05D000236 ORTHO05D000192 2.1e-08 62.8 104 38.5
Cpa.g.sc29.71 Carica papaya HOM05D000236 ORTHO05D000192 3.6e-08 62.0 101 43.6
FAN04G0410 Fragaria x ananassa HOM05D000236 ORTHO05D000192 3.6e-08 62.0 100 42.0
PGR042G1254 Punica granatum HOM05D000236 ORTHO05D000192 3.6e-08 62.0 98 43.9
FAN13G0741 Fragaria x ananassa HOM05D000236 ORTHO05D000192 4.7e-08 61.6 100 41.0
Manes.02G032537 Manihot esculenta HOM05D000236 ORTHO05D000192 4.7e-08 61.6 104 44.2
HPP92_014951 Vanilla planifolia HOM05D000236 ORTHO05D000192 4.7e-08 61.6 102 43.1
HPP92_014978 Vanilla planifolia HOM05D000236 ORTHO05D000192 4.7e-08 61.6 102 43.1
Actinidia02076 Actinidia chinensis HOM05D000236 ORTHO05D000192 6.1e-08 61.2 75 54.7
ClCG01G003540 Citrullus lanatus HOM05D000236 ORTHO05D000192 6.1e-08 61.2 102 41.2
MELO3C005590.2 Cucumis melo HOM05D000236 ORTHO05D000192 6.1e-08 61.2 102 41.2
CsaV3_5G003650 Cucumis sativus L. HOM05D000236 ORTHO05D000192 6.1e-08 61.2 102 41.2
Duzib084G1034 Durio zibethinus HOM05D000236 ORTHO05D000192 8.0e-08 60.8 101 44.6
MD06G1063800 Malus domestica HOM05D000236 ORTHO05D000192 8.0e-08 60.8 100 42.0
Thecc.03G263500 Theobroma cacao HOM05D000236 ORTHO05D000192 8.0e-08 60.8 101 42.6
Cc02_g36660 Coffea canephora HOM05D000236 ORTHO05D000192 1.0e-07 60.5 110 40.0
RcHm_v2.0_Chr7g0201041 Rosa chinensis HOM05D000236 ORTHO05D000192 1.0e-07 60.5 100 41.0
Medtr8g036160 Medicago truncatula HOM05D000236 ORTHO05D000192 1.4e-07 60.1 105 41.0
Prupe.5G081500 Prunus persica HOM05D000236 ORTHO05D000192 1.4e-07 60.1 101 40.6
Gohir.A08G174800 Gossypium hirsutum HOM05D000236 ORTHO05D000192 2.3e-07 59.3 104 42.3
Sopen01g037120 Solanum pennellii HOM05D000236 ORTHO05D000192 2.3e-07 59.3 112 42.9
Sed0002526 Sechium edule HOM05D000236 ORTHO05D000192 3.0e-07 58.9 99 40.4
Sed0023143 Sechium edule HOM05D000236 ORTHO05D000192 4.0e-07 58.5 101 40.6
Gohir.D08G193400 Gossypium hirsutum HOM05D000236 ORTHO05D000192 5.2e-07 58.2 104 44.2
Solyc01g091370.4 Solanum lycopersicum HOM05D000236 ORTHO05D000192 5.2e-07 58.2 112 42.9
CANSAT21G1767 Cannabis sativa HOM05D000236 ORTHO05D000192 6.8e-07 57.8 102 39.2
VMungo0331G1380 Vigna mungo HOM05D000236 ORTHO05D000192 6.8e-07 57.8 114 38.6
Hma1.2p1_0033F.1_g021030 Hydrangea macrophylla HOM05D000236 ORTHO05D000192 8.9e-07 57.4 95 42.1
Gohir.A11G020700 Gossypium hirsutum HOM05D000236 ORTHO05D000192 1.2e-06 57.0 104 42.3
Gohir.D11G020400 Gossypium hirsutum HOM05D000236 ORTHO05D000192 1.2e-06 57.0 104 42.3
Gorai.007G021700 Gossypium raimondii HOM05D000236 ORTHO05D000192 1.2e-06 57.0 104 42.3
Lalb_Chr09g0324551 Lupinus albus HOM05D000236 ORTHO05D000192 1.2e-06 57.0 105 41.9
PGSC0003DMG400012760 Solanum tuberosum HOM05D000236 ORTHO05D000192 1.2e-06 57.0 112 42.0
Duzib205G0831 Durio zibethinus HOM05D000236 ORTHO05D000192 2.0e-06 56.2 101 39.6
GSVIVG01018513001 Vitis vinifera HOM05D000236 ORTHO05D000192 2.0e-06 56.2 101 43.6
Ciclev10021222m.g Citrus clementina HOM05D000236 ORTHO05D000192 2.6e-06 55.8 101 43.6
Duzib268G0287 Durio zibethinus HOM05D000236 ORTHO05D000192 2.6e-06 55.8 69 47.8
Dinv22929 Davidia involucrata HOM05D000236 ORTHO05D000192 3.4e-06 55.5 104 39.4
Hma1.2p1_2294F.1_g319130 Hydrangea macrophylla HOM05D000236 ORTHO05D000192 3.4e-06 55.5 95 41.1
VMungo0251G1406 Vigna mungo HOM05D000236 ORTHO05D000192 3.4e-06 55.5 101 39.6
Atru.chr9.1461 Acer truncatum HOM05D000236 ORTHO05D000192 4.4e-06 55.1 101 41.6
Medtr4g101990 Medicago truncatula HOM05D000236 ORTHO05D000192 4.4e-06 55.1 102 36.3
MD00G1083100 Malus domestica HOM05D000236 ORTHO05D000192 5.7e-06 54.7 100 40.0
Migut.E01001 Erythranthe guttata HOM05D000236 ORTHO05D000192 7.5e-06 54.3 99 36.4
TWI15G0093 Tripterygium wilfordii HOM05D000236 ORTHO05D000192 7.5e-06 54.3 99 39.4
Glyma.17G136200 Glycine max HOM05D000236 ORTHO05D000192 9.8e-06 53.9 101 34.7
Potri.001G115800 Populus trichocarpa HOM05D000236 ORTHO05D000192 9.8e-06 53.9 100 37.0


User provided reference genes

Program Settings