Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 6.7e-145 517.3 257 100.0
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 4.1e-142 508.1 257 98.4
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 5.0e-132 474.6 257 92.6
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 2.8e-119 432.2 257 82.9
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 6.5e-116 421.0 260 82.3
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 5.2e-97 358.2 262 67.6
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 8.3e-95 350.9 262 67.6
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 7.0e-94 347.8 262 66.0
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 1.7e-92 343.2 258 67.8
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 2.3e-92 342.8 262 63.7
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 3.9e-92 342.0 258 68.2
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 3.9e-92 342.0 258 68.2
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 8.6e-92 340.9 258 65.9
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 2.5e-91 339.3 258 65.5
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 4.3e-91 338.6 262 65.6
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 4.3e-91 338.6 258 67.8
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 7.3e-91 337.8 258 67.8
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 7.3e-91 337.8 258 67.8
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 7.3e-91 337.8 258 67.8
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 4.7e-90 335.1 258 67.1
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 4.7e-90 335.1 258 65.1
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 3.1e-89 332.4 257 62.6
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 5.2e-89 331.6 260 65.8
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 5.8e-88 328.2 261 64.4
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 5.8e-88 328.2 256 64.1
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 3.7e-87 325.5 262 63.0
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 8.3e-87 324.3 256 63.3
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 2.4e-86 322.8 263 61.6
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 7.0e-86 321.2 256 62.5
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 7.0e-86 321.2 263 62.0
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 7.0e-86 321.2 261 62.1
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 1.2e-85 320.5 261 63.6
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 2.0e-85 319.7 257 62.6
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 4.6e-85 318.5 263 62.4
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 1.0e-84 317.4 263 61.6
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 1.3e-84 317.0 260 63.5
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 5.0e-84 315.1 263 62.0
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 9.5e-83 310.8 253 62.8
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 1.6e-82 310.1 255 61.6
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 1.6e-82 310.1 263 60.1
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 1.6e-82 310.1 265 60.8
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 2.1e-82 309.7 263 62.0
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 3.6e-82 308.9 263 61.6
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 3.1e-81 305.8 263 60.1
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 8.9e-81 304.3 259 60.6
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 1.2e-80 303.9 265 60.8
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 2.0e-80 303.1 264 59.5
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 2.0e-80 303.1 264 59.5
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 2.0e-80 303.1 265 60.0
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 1.3e-79 300.4 252 60.7
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 1.7e-79 300.1 260 58.1
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 1.7e-79 300.1 220 70.0
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 8.3e-79 297.7 261 56.7
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 1.4e-78 297.0 260 58.8
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 1.9e-78 296.6 258 57.4
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 2.4e-78 296.2 261 57.1
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 1.2e-77 293.9 254 60.2
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 1.2e-77 293.9 258 58.5
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 1.6e-77 293.5 256 59.4
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 1.6e-77 293.5 256 59.4
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 1.6e-77 293.5 256 59.4
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 1.6e-77 293.5 265 58.1
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 2.7e-77 292.7 264 59.8
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 2.7e-77 292.7 258 56.2
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 3.5e-77 292.4 263 56.3
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 4.6e-77 292.0 266 57.5
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 7.8e-77 291.2 261 57.1
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 1.0e-76 290.8 258 61.2
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 1.7e-76 290.0 264 57.6
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 1.7e-76 290.0 260 58.5
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 6.6e-76 288.1 260 56.2
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 8.6e-76 287.7 262 56.9
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 1.1e-75 287.3 261 55.2
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 1.1e-75 287.3 261 55.6
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 1.5e-75 287.0 265 57.4
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 1.9e-75 286.6 265 57.0
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 3.3e-75 285.8 262 57.3
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 5.6e-75 285.0 215 67.9
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 1.2e-74 283.9 259 56.8
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 1.6e-74 283.5 261 54.4
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 2.8e-74 282.7 272 53.7
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 4.7e-74 282.0 253 56.9
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 4.7e-74 282.0 262 55.3
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 5.2e-73 278.5 256 54.7
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 1.5e-72 276.9 224 62.5
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 2.4e-70 269.6 225 63.1
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 1.9e-67 260.0 317 46.4
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 7.3e-67 258.1 267 53.2
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 9.6e-67 257.7 230 57.8
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 4.7e-66 255.4 269 52.0
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 1.9e-62 243.4 225 58.2
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 1.6e-61 240.4 264 50.4
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.0e-60 237.7 254 49.2
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 1.9e-59 233.4 226 53.1
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 3.6e-58 229.2 257 49.8
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 3.1e-57 226.1 230 53.5
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 1.2e-56 224.2 164 65.9
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 1.5e-56 223.8 242 50.0
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 5.8e-56 221.9 165 66.1
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 1.1e-54 217.6 257 48.2
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 1.6e-50 203.8 186 54.8
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 9.0e-49 198.0 151 64.9
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 1.5e-43 180.6 157 55.4
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 1.5e-43 180.6 157 55.4
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 1.5e-43 180.6 157 55.4
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 7.4e-43 178.3 150 56.0
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 1.3e-42 177.6 147 56.5
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 5.5e-38 162.2 251 40.6
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 2.3e-36 156.8 153 54.2
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 2.5e-35 153.3 112 63.4
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 4.3e-35 152.5 124 56.5
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 5.3e-33 145.6 112 64.3
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 9.0e-33 144.8 260 34.6
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 1.2e-32 144.4 163 49.1
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 5.5e-30 135.6 201 39.8
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 1.3e-28 131.0 280 31.4
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 9.7e-27 124.8 103 59.2
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 1.4e-25 120.9 156 48.7
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 5.9e-24 115.5 103 55.3
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 1.0e-20 104.8 80 65.0
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 8.8e-20 101.7 79 63.3
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 3.3e-19 99.8 95 50.5
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 8.2e-18 95.1 167 36.5
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 2.4e-17 93.6 103 45.6
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 1.5e-16 90.9 184 36.4
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 2.6e-16 90.1 76 57.9
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 7.9e-13 78.6 48 77.1
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 2.0e-11 73.9 65 50.8
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 4.8e-10 69.3 95 41.1
MD01G1114600 Malus domestica HOM05D005673 ORTHO05D007081 8.5e-07 58.5 67 55.2


User provided reference genes

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