Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001519 Carpinus fangiana HOM05D007717 ORTHO05D009694 2.8e-140 501.9 248 100.0
Haze_17022 Corylus avellana HOM05D007717 ORTHO05D009694 9.1e-115 417.2 224 93.3
CiPaw.08G086800 Carya illinoinensis HOM05D007717 ORTHO05D009694 1.5e-96 356.7 226 82.3
QL12p018825 Quercus lobata HOM05D007717 ORTHO05D009694 1.5e-96 356.7 226 81.0
Manes.05G012500 Manihot esculenta HOM05D007717 ORTHO05D009694 5.4e-91 338.2 215 76.7
RcHm_v2.0_Chr3g0487001 Rosa chinensis HOM05D007717 ORTHO05D009694 9.2e-91 337.4 218 75.7
Duzib138G0230 Durio zibethinus HOM05D007717 ORTHO05D009694 7.8e-90 334.3 222 73.9
Glyma.02G010200 Glycine max HOM05D007717 ORTHO05D009694 5.0e-89 331.6 221 71.5
Thecc.01G318800 Theobroma cacao HOM05D007717 ORTHO05D009694 6.6e-89 331.3 221 74.2
Prupe.3G006900 Prunus persica HOM05D007717 ORTHO05D009694 8.6e-89 330.9 231 73.2
TAR362G0991 Trochodendron aralioides HOM05D007717 ORTHO05D009694 2.5e-88 329.3 224 72.8
TWI14G0584 Tripterygium wilfordii HOM05D007717 ORTHO05D009694 4.3e-88 328.6 224 71.0
FvH4_1g26780 Fragaria vesca HOM05D007717 ORTHO05D009694 5.6e-88 328.2 225 71.6
Hma1.2p1_0408F.1_g146470 Hydrangea macrophylla HOM05D007717 ORTHO05D009694 4.7e-87 325.1 220 70.0
FAN19G0412 Fragaria x ananassa HOM05D007717 ORTHO05D009694 6.1e-87 324.7 227 71.4
Potri.014G117500 Populus trichocarpa HOM05D007717 ORTHO05D009694 6.1e-87 324.7 215 74.9
Atru.chr5.944 Acer truncatum HOM05D007717 ORTHO05D009694 1.0e-86 323.9 220 72.7
MD09G1286700 Malus domestica HOM05D007717 ORTHO05D009694 2.3e-86 322.8 229 69.9
EL10As5g23606 Beta vulgaris HOM05D007717 ORTHO05D009694 5.2e-86 321.6 218 72.5
Lj5g0017185 Lotus japonicus HOM05D007717 ORTHO05D009694 6.8e-86 321.2 211 73.0
GSVIVG01028159001 Vitis vinifera HOM05D007717 ORTHO05D009694 2.6e-85 319.3 220 71.4
VMungo0720G1298 Vigna mungo HOM05D007717 ORTHO05D009694 4.4e-85 318.5 223 67.3
Ciclev10021685m.g Citrus clementina HOM05D007717 ORTHO05D009694 7.5e-85 317.8 233 68.7
Psat6g160600 Pisum sativum HOM05D007717 ORTHO05D009694 7.5e-85 317.8 224 71.0
AUR62024600 Chenopodium quinoa HOM05D007717 ORTHO05D009694 9.8e-85 317.4 221 70.6
Medtr1g086585 Medicago truncatula HOM05D007717 ORTHO05D009694 2.9e-84 315.8 223 69.5
A07p34270 Brassica napus HOM05D007717 ORTHO05D009694 8.3e-84 314.3 228 67.5
CSS0048227 Camellia sinensis var. sinensis HOM05D007717 ORTHO05D009694 1.9e-83 313.2 227 68.7
BraA07t31055Z Brassica rapa HOM05D007717 ORTHO05D009694 2.4e-83 312.8 228 67.1
Carub.0006s3530 Capsella rubella HOM05D007717 ORTHO05D009694 2.4e-83 312.8 223 65.0
C06p42310 Brassica napus HOM05D007717 ORTHO05D009694 3.2e-83 312.4 223 67.3
BolC6t39198H Brassica oleracea HOM05D007717 ORTHO05D009694 4.1e-83 312.0 225 67.1
Lalb_Chr06g0167011 Lupinus albus HOM05D007717 ORTHO05D009694 4.1e-83 312.0 224 68.3
Phvul.007G212300 Phaseolus vulgaris HOM05D007717 ORTHO05D009694 4.1e-83 312.0 222 66.7
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 5.4e-83 311.6 223 68.2
Actinidia17924 Actinidia chinensis HOM05D007717 ORTHO05D009694 7.0e-83 311.2 224 66.5
ClCG10G011620 Citrullus lanatus HOM05D007717 ORTHO05D009694 7.0e-83 311.2 219 68.5
arahy.Tifrunner.gnm1.ann1.P1ZICW Arachis hypogaea HOM05D007717 ORTHO05D009694 9.2e-83 310.8 209 70.8
PSO210G2166 Papaver somniferum HOM05D007717 ORTHO05D009694 9.2e-83 310.8 222 68.5
CsaV3_3G026540 Cucumis sativus L. HOM05D007717 ORTHO05D009694 2.0e-82 309.7 216 69.9
Eucgr.K03559 Eucalyptus grandis HOM05D007717 ORTHO05D009694 4.6e-82 308.5 213 72.3
Gohir.D07G134000 Gossypium hirsutum HOM05D007717 ORTHO05D009694 6.0e-82 308.1 213 71.4
Gorai.001G145600 Gossypium raimondii HOM05D007717 ORTHO05D009694 6.0e-82 308.1 213 71.4
Thhalv10028874m.g Eutrema salsugineum HOM05D007717 ORTHO05D009694 7.8e-82 307.8 221 67.9
Sp6g01810 Schrenkiella parvula HOM05D007717 ORTHO05D009694 1.0e-81 307.4 223 67.3
Rhsim13G0002400 Rhododendron simsii HOM05D007717 ORTHO05D009694 1.3e-81 307.0 225 66.7
AT4G01935 Arabidopsis thaliana HOM05D007717 ORTHO05D009694 1.7e-81 306.6 220 65.5
THA.LOC104825934 Tarenaya hassleriana HOM05D007717 ORTHO05D009694 3.9e-81 305.4 209 70.8
MELO3C012927.2 Cucumis melo HOM05D007717 ORTHO05D009694 7.3e-80 301.2 228 66.2
Aa31LG5G1580 Aethionema arabicum HOM05D007717 ORTHO05D009694 9.5e-80 300.8 221 66.1
Oeu038956.1 Olea europaea HOM05D007717 ORTHO05D009694 6.2e-79 298.1 224 67.0
Sed0016465 Sechium edule HOM05D007717 ORTHO05D009694 1.1e-78 297.4 245 62.9
Migut.N00924 Erythranthe guttata HOM05D007717 ORTHO05D009694 1.4e-78 297.0 226 63.7
ECA236G3512 Erigeron canadensis HOM05D007717 ORTHO05D009694 2.3e-78 296.2 218 66.1
Aqoxy2G02636 Aquilegia oxysepala HOM05D007717 ORTHO05D009694 3.1e-78 295.8 193 75.6
SGA_v2.0_scaffold198G41108 Striga asiatica HOM05D007717 ORTHO05D009694 5.2e-78 295.0 204 70.1
HanXRQChr04g0106271 Helianthus annuus HOM05D007717 ORTHO05D009694 5.8e-77 291.6 202 69.3
Nitab4.5_0002828g0050 Nicotiana tabacum HOM05D007717 ORTHO05D009694 4.9e-76 288.5 215 65.6
Nitab4.5_0004006g0040 Nicotiana tabacum HOM05D007717 ORTHO05D009694 1.4e-75 287.0 216 66.2
ATR0693G230 Amborella trichopoda HOM05D007717 ORTHO05D009694 2.7e-74 282.7 223 62.8
SalBow2G0697 Salvia bowleyana HOM05D007717 ORTHO05D009694 2.7e-74 282.7 204 66.2
MSTRG.15592 Avicennia marina HOM05D007717 ORTHO05D009694 1.0e-73 280.8 199 67.3
Sabra14G0087200 Salix brachista HOM05D007717 ORTHO05D009694 1.7e-73 280.0 188 73.4
unitig_748.g7768 Utricularia gibba HOM05D007717 ORTHO05D009694 3.6e-71 272.3 229 59.0
CAN.G1209.17 Capsicum annuum HOM05D007717 ORTHO05D009694 4.7e-71 271.9 203 67.5
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 8.1e-71 271.2 193 69.9
BcaB04g18936 Brassica carinata HOM05D007717 ORTHO05D009694 1.4e-70 270.4 223 61.4
Cc01_g21670 Coffea canephora HOM05D007717 ORTHO05D009694 3.1e-70 269.2 208 64.9
Lj2C1210T5 Lonicera japonica HOM05D007717 ORTHO05D009694 3.1e-70 269.2 246 58.5
PGR044G1932 Punica granatum HOM05D007717 ORTHO05D009694 1.4e-67 260.4 188 69.7
Os01g0252600 Oryza sativa ssp. japonica HOM05D007717 ORTHO05D009694 2.8e-63 246.1 217 54.8
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 2.6e-61 239.6 156 74.4
Ah.11g049130 Amaranthus hybridus HOM05D007717 ORTHO05D009694 5.4e-59 231.9 211 56.4
Zm00001eb127510 Zea mays HOM05D007717 ORTHO05D009694 2.7e-58 229.6 205 56.6
Nn3g21819 Nelumbo nucifera HOM05D007717 ORTHO05D009694 7.8e-58 228.0 172 68.6
Mapoly0015s0128 Marchantia polymorpha HOM05D007717 ORTHO05D009694 6.2e-55 218.4 214 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3558 Anthoceros agrestis HOM05D007717 ORTHO05D009694 6.9e-54 214.9 202 53.0
Hund02948 Selenicereus undatus HOM05D007717 ORTHO05D009694 2.6e-53 213.0 174 65.5
Dinv00087 Davidia involucrata HOM05D007717 ORTHO05D009694 4.4e-53 212.2 153 66.7
Pp3c5_22240 Physcomitrium patens HOM05D007717 ORTHO05D009694 5.8e-53 211.8 211 51.2
SMO117G0327 Selaginella moellendorffii HOM05D007717 ORTHO05D009694 1.7e-49 200.3 204 50.5
Gohir.A07G129700 Gossypium hirsutum HOM05D007717 ORTHO05D009694 3.1e-46 189.5 140 70.0
MBI18_g27382_MAGBIO Magnolia biondii HOM05D007717 ORTHO05D009694 8.4e-44 181.4 216 46.8
BcaC08g46194 Brassica carinata HOM05D007717 ORTHO05D009694 2.1e-42 176.8 103 76.7
arahy.Tifrunner.gnm1.ann1.259I69 Arachis hypogaea HOM05D007717 ORTHO05D009694 1.8e-41 173.7 209 45.5
vmacro02381 Vaccinium macrocarpon HOM05D007717 ORTHO05D009694 3.1e-38 162.9 122 66.4
Actinidia37701 Actinidia chinensis HOM05D007717 ORTHO05D009694 3.8e-36 156.0 180 48.9
Cpa.g.sc18.99 Carica papaya HOM05D007717 ORTHO05D009694 7.1e-35 151.8 107 71.0
FAN23G2736 Fragaria x ananassa HOM05D007717 ORTHO05D009694 1.8e-33 147.1 80 83.8
Sc17g0000260 Simmondsia chinensis HOM05D007717 ORTHO05D009694 1.7e-28 130.6 124 55.6
FAN28G2335 Fragaria x ananassa HOM05D007717 ORTHO05D009694 2.9e-28 129.8 114 59.6
BcaC08g46195 Brassica carinata HOM05D007717 ORTHO05D009694 2.5e-27 126.7 109 56.9
Cre17.g729900 Chlamydomonas reinhardtii HOM05D007717 ORTHO05D009694 2.4e-22 110.2 217 34.6
CARHR249750 Cardamine hirsuta HOM05D007717 ORTHO05D009694 1.1e-14 84.7 62 62.9
CBR_g40482 Chara braunii HOM05D001161 ORTHO05D000497 5.1e-09 65.9 120 36.7


User provided reference genes

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