Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001273 Carpinus fangiana HOM05D005861 ORTHO05D007151 8.2e-177 623.6 319 100.0
Cfa001144 Carpinus fangiana HOM05D005861 ORTHO05D007151 8.2e-84 314.7 217 78.3
Haze_05240 Corylus avellana HOM05D005861 ORTHO05D007151 1.5e-82 310.5 217 77.4
QL11p011864 Quercus lobata HOM05D005861 ORTHO05D007151 1.7e-76 290.4 217 71.4
QL93p0142_0007 Quercus lobata HOM05D005861 ORTHO05D007151 1.7e-76 290.4 217 71.4
CiPaw.09G138900 Carya illinoinensis HOM05D005861 ORTHO05D007151 6.3e-76 288.5 217 69.6
Nn7g38377 Nelumbo nucifera HOM05D005861 ORTHO05D007151 4.1e-75 285.8 217 71.0
Dinv05874 Davidia involucrata HOM05D005861 ORTHO05D007151 1.2e-74 284.3 219 69.9
CAN.G809.40 Capsicum annuum HOM05D005861 ORTHO05D007151 1.5e-74 283.9 215 69.3
CsaV3_1G010060 Cucumis sativus L. HOM05D005861 ORTHO05D007151 1.5e-74 283.9 219 68.9
TAR636G0982 Trochodendron aralioides HOM05D005861 ORTHO05D007151 2.0e-74 283.5 244 64.8
PGSC0003DMG401007333 Solanum tuberosum HOM05D005861 ORTHO05D007151 2.6e-74 283.1 215 68.8
CSS0003156 Camellia sinensis var. sinensis HOM05D005861 ORTHO05D007151 3.4e-74 282.7 224 68.3
Lj6g0026320 Lotus japonicus HOM05D005861 ORTHO05D007151 3.4e-74 282.7 223 67.3
ClCG03G004130 Citrullus lanatus HOM05D005861 ORTHO05D007151 4.5e-74 282.3 219 68.9
Lalb_Chr18g0052021 Lupinus albus HOM05D005861 ORTHO05D007151 4.5e-74 282.3 250 62.8
Sopen02g026550 Solanum pennellii HOM05D005861 ORTHO05D007151 4.5e-74 282.3 215 68.8
Ciclev10015087m.g Citrus clementina HOM05D005861 ORTHO05D007151 5.9e-74 282.0 229 65.1
TWI38G1305 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 1.3e-73 280.8 229 65.5
Migut.M02023 Erythranthe guttata HOM05D005861 ORTHO05D007151 1.7e-73 280.4 224 67.0
Migut.O00467 Erythranthe guttata HOM05D005861 ORTHO05D007151 1.7e-73 280.4 224 67.0
Peaxi162Scf00036g00158 Petunia axillaris HOM05D005861 ORTHO05D007151 1.7e-73 280.4 213 67.1
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 2.9e-73 279.6 230 63.9
MELO3C002396.2 Cucumis melo HOM05D005861 ORTHO05D007151 3.8e-73 279.3 215 68.8
Manes.03G071200 Manihot esculenta HOM05D005861 ORTHO05D007151 3.8e-73 279.3 224 66.1
Prupe.4G119100 Prunus persica HOM05D005861 ORTHO05D007151 3.8e-73 279.3 219 67.6
Thecc.09G140900 Theobroma cacao HOM05D005861 ORTHO05D007151 3.8e-73 279.3 219 68.5
Nitab4.5_0000844g0330 Nicotiana tabacum HOM05D005861 ORTHO05D007151 5.0e-73 278.9 215 68.8
Solyc02g081920.3 Solanum lycopersicum HOM05D005861 ORTHO05D007151 5.0e-73 278.9 215 67.9
TWI63G1685 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 5.0e-73 278.9 217 67.3
GSVIVG01012161001 Vitis vinifera HOM05D005861 ORTHO05D007151 5.0e-73 278.9 219 68.5
Gohir.A05G011700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 6.5e-73 278.5 223 68.2
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 1.1e-72 277.7 219 66.7
Oeu008732.1 Olea europaea HOM05D005861 ORTHO05D007151 1.1e-72 277.7 302 55.0
Gorai.009G012700 Gossypium raimondii HOM05D005861 ORTHO05D007151 1.4e-72 277.3 223 67.7
Sed0025210 Sechium edule HOM05D005861 ORTHO05D007151 1.4e-72 277.3 219 67.6
Potri.003G155100 Populus trichocarpa HOM05D005861 ORTHO05D007151 2.5e-72 276.6 233 63.5
MSTRG.18594 Avicennia marina HOM05D005861 ORTHO05D007151 3.2e-72 276.2 219 66.2
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 4.2e-72 275.8 217 65.0
Cc09_g01980 Coffea canephora HOM05D005861 ORTHO05D007151 5.5e-72 275.4 226 67.3
RcHm_v2.0_Chr5g0021381 Rosa chinensis HOM05D005861 ORTHO05D007151 7.2e-72 275.0 219 67.6
Gohir.D05G012700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 9.4e-72 274.6 223 67.3
Nitab4.5_0000632g0140 Nicotiana tabacum HOM05D005861 ORTHO05D007151 9.4e-72 274.6 215 67.9
FvH4_3g13130 Fragaria vesca HOM05D005861 ORTHO05D007151 1.2e-71 274.2 219 67.1
AUR62039890 Chenopodium quinoa HOM05D005861 ORTHO05D007151 2.1e-71 273.5 217 64.5
arahy.Tifrunner.gnm1.ann1.RN3XR3 Arachis hypogaea HOM05D005861 ORTHO05D007151 2.7e-71 273.1 229 64.2
FAN16G2684 Fragaria x ananassa HOM05D005861 ORTHO05D007151 2.7e-71 273.1 219 66.7
AL7G33690 Arabidopsis lyrata HOM05D005861 ORTHO05D007151 4.7e-71 272.3 219 65.3
MD10G1226200 Malus domestica HOM05D005861 ORTHO05D007151 4.7e-71 272.3 219 67.1
Atru.chr10.266 Acer truncatum HOM05D005861 ORTHO05D007151 6.1e-71 271.9 229 63.3
AUR62040329 Chenopodium quinoa HOM05D005861 ORTHO05D007151 6.1e-71 271.9 217 64.1
FAN21G1611 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.0e-70 271.2 219 66.2
Sc24g0002940 Simmondsia chinensis HOM05D005861 ORTHO05D007151 1.4e-70 270.8 217 66.4
Glyma.15G156500 Glycine max HOM05D005861 ORTHO05D007151 2.3e-70 270.0 234 63.2
PSO063G0366 Papaver somniferum HOM05D005861 ORTHO05D007151 2.3e-70 270.0 219 64.4
PSO782G3554 Papaver somniferum HOM05D005861 ORTHO05D007151 2.3e-70 270.0 219 64.4
Glyma.09G049800 Glycine max HOM05D005861 ORTHO05D007151 3.0e-70 269.6 224 65.2
Aqoxy3G04101 Aquilegia oxysepala HOM05D005861 ORTHO05D007151 5.1e-70 268.9 242 60.7
SGA_v2.0_scaffold298G47711 Striga asiatica HOM05D005861 ORTHO05D007151 5.1e-70 268.9 219 65.3
Carub.0007s2100 Capsella rubella HOM05D005861 ORTHO05D007151 6.7e-70 268.5 219 63.9
BcaB03g11658 Brassica carinata HOM05D005861 ORTHO05D007151 8.8e-70 268.1 219 63.9
Aa31LG6G2540 Aethionema arabicum HOM05D005861 ORTHO05D007151 1.1e-69 267.7 217 65.4
AT4G20130 Arabidopsis thaliana HOM05D005861 ORTHO05D007151 1.1e-69 267.7 219 63.5
arahy.Tifrunner.gnm1.ann1.MH4CM1 Arachis hypogaea HOM05D005861 ORTHO05D007151 2.0e-69 266.9 231 64.1
VMungo1309G1344 Vigna mungo HOM05D005861 ORTHO05D007151 2.0e-69 266.9 223 65.0
C03p82790 Brassica napus HOM05D005861 ORTHO05D007151 2.6e-69 266.5 219 63.5
BolC3t20561H Brassica oleracea HOM05D005861 ORTHO05D007151 2.6e-69 266.5 219 63.5
Sp7g18560 Schrenkiella parvula HOM05D005861 ORTHO05D007151 2.6e-69 266.5 219 63.9
Phvul.009G243500 Phaseolus vulgaris HOM05D005861 ORTHO05D007151 3.3e-69 266.2 224 64.3
BcaC01g00656 Brassica carinata HOM05D005861 ORTHO05D007151 4.4e-69 265.8 219 63.5
CARHR226960 Cardamine hirsuta HOM05D005861 ORTHO05D007151 4.4e-69 265.8 219 62.1
Medtr2g035660 Medicago truncatula HOM05D005861 ORTHO05D007151 4.4e-69 265.8 222 64.9
A08p14640 Brassica napus HOM05D005861 ORTHO05D007151 7.4e-69 265.0 219 63.0
BraA08t33451Z Brassica rapa HOM05D005861 ORTHO05D007151 7.4e-69 265.0 219 63.0
Thhalv10027180m.g Eutrema salsugineum HOM05D005861 ORTHO05D007151 7.4e-69 265.0 219 63.0
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 2.2e-68 263.5 223 63.7
TPR.G26579 Trifolium pratense HOM05D005861 ORTHO05D007151 3.7e-68 262.7 225 64.0
EL10Ac3g07109 Beta vulgaris HOM05D005861 ORTHO05D007151 4.8e-68 262.3 221 62.0
THA.LOC104811881 Tarenaya hassleriana HOM05D005861 ORTHO05D007151 4.8e-68 262.3 223 61.4
Eucgr.D00007 Eucalyptus grandis HOM05D005861 ORTHO05D007151 1.8e-67 260.4 223 63.7
Psat1g150560 Pisum sativum HOM05D005861 ORTHO05D007151 2.6e-66 256.5 218 63.3
vmacro03562 Vaccinium macrocarpon HOM05D005861 ORTHO05D007151 3.5e-66 256.1 219 61.6
PGR004G1814 Punica granatum HOM05D005861 ORTHO05D007151 1.7e-65 253.8 208 66.3
unitig_37.g12046 Utricularia gibba HOM05D005861 ORTHO05D007151 2.2e-65 253.4 219 60.3
Ah.08g212320 Amaranthus hybridus HOM05D005861 ORTHO05D007151 3.8e-65 252.7 220 60.5
HanXRQChr04g0116561 Helianthus annuus HOM05D005861 ORTHO05D007151 1.6e-63 247.3 239 54.4
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 1.4e-62 244.2 224 55.4
Gorai.N022300 Gossypium raimondii HOM05D005861 ORTHO05D007151 8.8e-62 241.5 221 62.0
ECA236G3447 Erigeron canadensis HOM05D005861 ORTHO05D007151 1.4e-59 234.2 220 55.0
Cpa.g.sc30.93 Carica papaya HOM05D005861 ORTHO05D007151 1.2e-58 231.1 185 68.1
FAN25G2772 Fragaria x ananassa HOM05D005861 ORTHO05D007151 8.0e-55 218.4 217 57.1
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 5.9e-50 202.2 217 53.0
Duzib168G0529 Durio zibethinus HOM05D005861 ORTHO05D007151 1.0e-49 201.4 217 52.1
AagrBONN_evm.TU.Sc2ySwM_344.4889 Anthoceros agrestis HOM05D005861 ORTHO05D007151 6.5e-49 198.7 229 48.0
Mapoly0003s0096 Marchantia polymorpha HOM05D005861 ORTHO05D007151 3.2e-48 196.4 232 45.3
Pp3c8_21700 Physcomitrium patens HOM05D005861 ORTHO05D007151 7.2e-48 195.3 214 48.6
Hund25553 Selenicereus undatus HOM05D005861 ORTHO05D007151 1.2e-47 194.5 220 48.6
Gohir.D05G012400 Gossypium hirsutum HOM05D005861 ORTHO05D007151 1.5e-45 187.6 176 61.4
SMO331G0022 Selaginella moellendorffii HOM05D005861 ORTHO05D007151 3.4e-45 186.4 223 43.5
A04p29830 Brassica napus HOM05D005861 ORTHO05D007151 4.3e-40 169.5 225 48.4
BraA04t18443Z Brassica rapa HOM05D005861 ORTHO05D007151 9.5e-40 168.3 225 48.4
Ca_28373_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 1.4e-38 164.5 88 86.4
RcHm_v2.0_Chr3g0456081 Rosa chinensis HOM05D005861 ORTHO05D007151 2.3e-38 163.7 93 82.8
Duzib187G1938 Durio zibethinus HOM05D005861 ORTHO05D007151 1.3e-36 157.9 100 75.0
HPP92_009502 Vanilla planifolia HOM05D005861 ORTHO05D007151 2.2e-36 157.1 137 59.9
CDE02G4422 Ceratophyllum demersum HOM05D005861 ORTHO05D007151 6.4e-36 155.6 248 44.0
Zm00001eb345040 Zea mays HOM05D005861 ORTHO05D007151 1.1e-35 154.8 174 49.4
Lj6g0014924 Lotus japonicus HOM05D005861 ORTHO05D007151 3.2e-35 153.3 111 71.2
Os05g0587200 Oryza sativa ssp. japonica HOM05D005861 ORTHO05D007151 2.7e-34 150.2 90 76.7
RcHm_v2.0_Chr5g0063511 Rosa chinensis HOM05D005861 ORTHO05D007151 1.0e-30 138.3 73 89.0
CBR_g61479 Chara braunii HOM05D005861 ORTHO05D007151 1.1e-27 128.3 216 39.4
Lj1g0019510 Lotus japonicus HOM05D005861 ORTHO05D007151 9.2e-27 125.2 70 84.3
Lj1g0009858 Lotus japonicus HOM05D005861 ORTHO05D007151 8.6e-25 118.6 64 81.2
Lj3g0008154 Lotus japonicus HOM05D005861 ORTHO05D007151 1.3e-17 94.7 142 44.4
A03p17610 Brassica napus HOM05D005861 ORTHO05D007151 1.9e-16 90.9 48 81.2
MD05G1244800 Malus domestica HOM05D005861 ORTHO05D007151 1.9e-16 90.9 57 73.7
Lj4g0007893 Lotus japonicus HOM05D005861 ORTHO05D007151 5.4e-11 72.8 52 69.2
A03p17620 Brassica napus HOM05D005861 ORTHO05D007151 3.5e-10 70.1 40 77.5
MD05G1244700 Malus domestica HOM05D005861 ORTHO05D007151 7.8e-10 68.9 41 80.5
Peaxi162Scf00524g00007 Petunia axillaris HOM05D001309 ORTHO05D000385 7.8e-10 68.9 47 70.2


User provided reference genes

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