Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 1.1e-120 436.8 242 100.0
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 1.2e-116 423.3 243 94.2
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 1.2e-98 363.6 241 80.5
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 3.5e-87 325.5 239 73.2
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 1.9e-77 293.1 240 67.5
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 2.8e-76 289.3 243 64.6
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 9.0e-75 284.3 244 63.1
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 2.2e-73 279.6 244 63.1
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 3.8e-73 278.9 238 65.5
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 5.4e-72 275.0 242 60.7
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 1.8e-70 270.0 241 60.2
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 2.3e-70 269.6 242 59.1
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 1.5e-69 266.9 243 60.5
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 1.5e-69 266.9 244 59.8
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 1.9e-69 266.5 244 59.0
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 6.9e-67 258.1 241 58.9
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 1.5e-66 256.9 246 64.2
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 2.5e-64 249.6 247 62.8
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 4.2e-64 248.8 240 57.5
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 4.2e-64 248.8 242 61.2
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.2e-63 247.3 240 57.5
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 3.5e-63 245.7 241 58.1
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 7.9e-63 244.6 241 58.1
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 5.1e-62 241.9 241 56.4
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 6.7e-62 241.5 242 58.7
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 1.1e-61 240.7 240 57.9
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.1e-61 240.7 241 56.4
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 1.9e-61 240.0 243 58.0
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 1.9e-61 240.0 243 58.0
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 5.7e-61 238.4 245 58.4
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 2.1e-60 236.5 244 58.6
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.1e-59 234.2 244 57.8
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 4.1e-59 232.3 241 55.6
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 9.0e-59 231.1 244 57.0
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 1.2e-58 230.7 246 61.4
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 5.8e-58 228.4 244 57.0
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 1.2e-55 220.7 243 54.7
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 1.0e-54 217.6 240 55.4
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 1.3e-54 217.2 247 51.0
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 8.7e-54 214.5 220 54.5
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 1.6e-52 210.3 220 54.1
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 3.7e-52 209.1 242 52.1
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 3.7e-52 209.1 237 50.2
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 4.8e-52 208.8 245 47.3
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 1.4e-51 207.2 245 51.8
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 3.1e-51 206.1 224 54.0
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 2.6e-50 203.0 240 49.2
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 4.5e-50 202.2 245 48.6
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 5.9e-50 201.8 240 49.2
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 1.0e-49 201.1 221 51.6
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 1.3e-49 200.7 249 50.6
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 1.7e-49 200.3 221 52.0
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 2.2e-49 199.9 245 47.3
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 1.9e-48 196.8 246 48.8
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 1.9e-48 196.8 241 47.3
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 2.5e-48 196.4 221 52.0
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 3.2e-48 196.1 234 49.1
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 6.1e-47 191.8 219 49.8
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 1.8e-46 190.3 228 50.0
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 8.8e-46 188.0 238 48.3
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 4.3e-45 185.7 243 49.0
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 5.7e-45 185.3 263 44.5
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 2.2e-44 183.3 239 46.0
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 1.8e-43 180.3 239 45.6
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 2.6e-42 176.4 239 44.8
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 5.9e-42 175.3 240 47.5
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 1.0e-41 174.5 244 45.9
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 1.7e-41 173.7 237 45.6
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 2.2e-41 173.3 241 45.2
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 2.9e-41 172.9 237 45.1
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 1.4e-40 170.6 204 49.0
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 1.9e-40 170.2 204 49.0
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 4.2e-40 169.1 245 44.1
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 4.2e-40 169.1 246 43.9
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 2.1e-39 166.8 246 45.9
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 2.0e-37 160.2 244 48.8
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 2.6e-37 159.8 225 48.9
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 3.3e-37 159.5 246 49.6
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 2.2e-36 156.8 221 50.2
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 3.1e-35 152.9 136 64.0
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 5.3e-35 152.1 208 52.9
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 9.1e-35 151.4 166 54.8
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 3.5e-34 149.4 249 44.2
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 5.0e-33 145.6 129 58.1
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 5.0e-33 145.6 240 40.8
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 6.5e-33 145.2 259 42.5
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.9e-32 143.7 243 42.8
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 1.2e-31 141.0 219 49.3
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 8.0e-31 138.3 247 44.9
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 4.0e-30 136.0 239 43.1
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 5.2e-30 135.6 247 38.9
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 2.4e-27 126.7 182 46.2
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.2e-26 124.4 221 39.4
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 2.7e-26 123.2 231 45.0
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.7e-26 123.2 206 41.3
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 8.5e-25 118.2 239 40.2
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 8.5e-25 118.2 239 40.2
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 1.1e-24 117.9 244 35.2
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 1.5e-24 117.5 265 36.6
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 2.5e-24 116.7 250 40.8
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 4.2e-24 115.9 239 40.6
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 5.5e-24 115.5 238 39.5
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 5.5e-24 115.5 238 39.5
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 1.2e-23 114.4 259 38.6
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 3.6e-23 112.8 236 39.8
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 8.0e-23 111.7 228 42.1
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 8.0e-23 111.7 228 42.1
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 8.0e-23 111.7 249 41.4
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.0e-22 111.3 243 38.7
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 4.0e-22 109.4 202 38.1
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 8.8e-22 108.2 103 61.2
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 4.4e-21 105.9 241 38.2
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 7.5e-21 105.1 202 37.6
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 2.2e-20 103.6 242 31.0
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 2.7e-18 96.7 203 41.9
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 4.5e-18 95.9 222 38.7
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 3.8e-17 92.8 228 37.7
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 3.4e-13 79.7 220 35.0
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 3.4e-13 79.7 173 41.0
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 2.2e-12 77.0 208 35.1
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 2.3e-09 67.0 130 36.2
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 2.9e-09 66.6 187 35.3
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 2.5e-08 63.5 110 42.7
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 9.5e-08 61.6 104 36.5
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 1.6e-07 60.8 59 52.5
SGA_v2.0_scaffold94G28577 Striga asiatica HOM05D001755 ORTHO05D001665 1.8e-06 57.4 194 29.4
SEGI_08629 Sequoiadendron giganteum HOM05D001755 ORTHO05D001665 6.8e-06 55.5 47 53.2


User provided reference genes

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