Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.1e-212 743.0 364 100.0
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.0e-170 603.6 364 84.1
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.4e-156 555.8 341 81.2
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 7.0e-156 554.3 346 79.5
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.5e-153 546.6 354 78.2
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.5e-153 546.6 361 76.7
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 9.5e-153 543.9 333 80.5
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.3e-151 539.3 331 81.6
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 6.8e-151 537.7 369 74.0
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 3.4e-150 535.4 324 81.2
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.4e-150 535.4 351 76.4
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.4e-148 530.0 362 74.9
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 9.2e-148 527.3 337 79.5
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 9.2e-148 527.3 402 69.9
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 7.8e-147 524.2 337 78.9
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.0e-146 523.9 351 75.5
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.0e-146 523.9 352 76.1
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.3e-146 523.5 350 76.6
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.7e-146 523.1 350 74.9
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.3e-146 522.7 335 77.0
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 3.8e-146 521.9 331 77.6
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.8e-146 521.9 325 79.4
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.1e-145 520.4 355 74.9
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 1.5e-145 520.0 348 75.3
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.5e-145 520.0 352 75.9
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 3.3e-145 518.8 340 77.6
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 7.3e-145 517.7 343 75.5
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 9.5e-145 517.3 350 74.0
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.2e-144 516.9 351 74.6
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.2e-144 516.9 351 74.6
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.6e-144 516.5 330 78.2
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.8e-144 515.8 352 73.6
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.8e-144 515.8 351 74.4
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.8e-144 515.8 328 77.1
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 3.6e-144 515.4 358 74.3
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 3.6e-144 515.4 350 75.4
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 4.7e-144 515.0 350 76.0
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 8.0e-144 514.2 380 71.1
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.8e-143 513.1 353 74.2
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.8e-143 513.1 341 72.4
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 2.3e-143 512.7 328 79.9
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.1e-143 512.3 352 74.1
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 4.0e-143 511.9 351 74.1
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 8.9e-143 510.8 331 79.2
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.5e-142 510.0 351 73.8
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.5e-142 510.0 350 74.6
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.0e-142 509.6 343 72.6
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.0e-142 509.6 352 73.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.0e-142 509.6 351 73.5
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.4e-142 508.4 350 74.6
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 5.8e-142 508.1 351 73.2
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 7.5e-142 507.7 348 73.6
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.9e-141 505.8 357 72.0
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 8.3e-141 504.2 348 72.7
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 8.3e-141 504.2 339 75.5
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.4e-140 503.4 352 72.4
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.9e-140 503.1 350 72.3
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.9e-140 503.1 355 70.1
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 4.1e-140 501.9 363 68.9
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 4.1e-140 501.9 355 73.2
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 7.0e-140 501.1 354 70.9
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 7.0e-140 501.1 545 53.9
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.2e-139 500.4 348 71.3
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.2e-139 500.4 354 70.6
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.2e-139 500.4 351 71.8
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.6e-139 500.0 348 71.8
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.0e-139 499.6 328 75.3
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 2.7e-139 499.2 354 70.6
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.7e-139 499.2 356 71.3
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 6.0e-139 498.0 338 73.4
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.0e-139 498.0 352 72.2
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.8e-139 497.7 347 71.8
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 7.8e-139 497.7 346 72.5
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 1.3e-138 496.9 350 71.7
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.7e-138 496.5 355 70.7
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.7e-138 496.5 338 74.3
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 2.3e-138 496.1 326 74.2
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 3.0e-138 495.7 327 74.9
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 3.9e-138 495.4 366 68.6
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 6.6e-138 494.6 350 71.4
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 6.6e-138 494.6 354 72.3
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 6.6e-138 494.6 351 72.4
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 8.6e-138 494.2 354 70.6
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.1e-137 493.8 355 70.1
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.1e-137 493.8 325 74.5
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 5.6e-137 491.5 325 74.8
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 7.3e-137 491.1 351 71.5
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.2e-136 490.3 331 75.5
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.2e-136 490.3 340 73.2
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.6e-136 490.0 352 70.2
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 2.1e-136 489.6 352 71.6
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 2.8e-136 489.2 366 69.4
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.0e-136 487.6 339 73.2
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.4e-135 486.9 349 71.1
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.4e-135 486.9 355 71.3
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 5.2e-135 485.0 351 70.7
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 8.9e-135 484.2 392 65.3
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 4.4e-134 481.9 324 73.5
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 5.8e-134 481.5 339 69.9
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 5.8e-134 481.5 340 72.6
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 7.5e-134 481.1 328 72.3
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 7.5e-134 481.1 331 74.0
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 9.8e-134 480.7 323 72.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.3e-133 480.3 333 70.0
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 3.7e-133 478.8 357 66.7
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.4e-132 476.1 352 68.5
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 3.2e-132 475.7 307 77.9
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 6.0e-131 471.5 332 73.5
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.7e-130 469.9 336 71.7
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.7e-130 469.9 323 71.8
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.0e-130 469.2 331 71.9
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.9e-130 468.8 380 64.2
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.9e-129 466.5 354 68.9
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 3.3e-129 465.7 327 70.9
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.1e-128 463.0 327 71.3
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.8e-128 462.6 327 70.9
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 3.6e-128 462.2 333 67.9
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 4.7e-128 461.8 338 68.9
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 8.1e-128 461.1 335 69.3
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.1e-127 459.1 314 73.9
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 5.8e-126 454.9 334 68.9
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 9.9e-126 454.1 315 73.0
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 6.0e-123 444.9 265 82.3
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.9e-121 439.9 287 79.4
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.8e-119 433.3 328 67.1
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.5e-118 430.3 346 65.9
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.4e-116 423.7 350 64.3
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.1e-113 414.1 352 63.4
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.6e-112 410.2 351 65.0
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.6e-112 410.2 267 76.8
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 3.1e-111 406.0 278 74.5
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 5.3e-111 405.2 263 77.6
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.9e-109 398.7 325 63.4
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.3e-96 357.5 325 56.3
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 4.8e-96 355.5 232 75.4
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 8.1e-96 354.8 329 55.0
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.5e-92 342.0 206 81.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 9.3e-92 341.3 221 74.2
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.7e-91 339.7 212 78.8
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.2e-85 320.1 234 69.7
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 3.8e-85 319.3 210 77.6
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 2.5e-81 306.6 288 53.1
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.4e-71 274.2 163 82.2
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.2e-70 271.2 218 67.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 7.2e-68 261.9 375 40.8
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 8.8e-66 255.0 161 77.0
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.3e-64 251.1 170 74.1
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 9.1e-63 245.0 190 66.3
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.5e-60 236.9 161 72.7
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.1e-55 221.5 163 68.7
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.3e-48 198.0 269 45.7
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 8.3e-48 195.3 339 39.2
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 5.0e-45 186.0 193 52.3
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 2.3e-42 177.2 120 70.8
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 2.7e-38 163.7 117 71.8
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.6e-27 127.9 253 33.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.6e-27 127.9 304 32.6
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.5e-25 121.3 138 47.1
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.3e-24 118.2 71 80.3
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.7e-24 117.9 382 30.1
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.5e-22 110.2 128 47.7
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.2e-19 101.7 73 68.5
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 8.1e-19 99.0 63 73.0
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.4e-18 98.2 92 56.5
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.7e-16 91.3 57 75.4
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.2e-16 90.9 56 80.4
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 3.9e-13 80.1 59 61.0
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 1.2e-06 58.5 143 33.6


User provided reference genes

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