Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 5.1e-87 324.3 157 100.0
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 4.5e-83 311.2 157 94.9
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 4.5e-83 311.2 157 94.9
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 4.9e-82 307.8 157 94.3
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 6.4e-82 307.4 157 93.6
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 1.4e-81 306.2 157 92.4
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 3.2e-81 305.1 157 91.7
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 3.2e-81 305.1 155 93.5
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 4.2e-81 304.7 157 91.1
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 4.2e-81 304.7 157 91.1
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 5.4e-81 304.3 156 92.3
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 1.2e-80 303.1 156 91.0
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 1.2e-80 303.1 156 91.0
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 1.6e-80 302.8 157 91.7
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 1.6e-80 302.8 157 92.4
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 2.1e-80 302.4 156 92.9
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 2.1e-80 302.4 157 89.8
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 2.1e-80 302.4 157 91.7
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 2.7e-80 302.0 157 91.1
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 2.7e-80 302.0 157 90.4
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 3.5e-80 301.6 157 90.4
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 4.6e-80 301.2 157 91.1
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 6.0e-80 300.8 156 90.4
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 6.0e-80 300.8 157 91.1
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 1.0e-79 300.1 157 90.4
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 1.0e-79 300.1 156 91.7
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 1.0e-79 300.1 157 90.4
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 1.3e-79 299.7 157 90.4
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 1.8e-79 299.3 157 89.8
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 2.3e-79 298.9 157 89.8
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 3.0e-79 298.5 156 90.4
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 3.0e-79 298.5 157 91.1
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 3.0e-79 298.5 157 91.1
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 3.0e-79 298.5 157 89.8
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 3.0e-79 298.5 157 91.1
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 3.9e-79 298.1 157 89.8
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 3.9e-79 298.1 157 90.4
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 5.1e-79 297.7 156 91.0
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 5.1e-79 297.7 157 90.4
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 6.7e-79 297.4 157 89.2
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 6.7e-79 297.4 156 91.0
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 6.7e-79 297.4 156 91.0
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 6.7e-79 297.4 157 89.8
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 8.7e-79 297.0 157 89.8
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 8.7e-79 297.0 157 90.4
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 8.7e-79 297.0 157 89.8
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 1.1e-78 296.6 157 89.8
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 1.1e-78 296.6 157 91.1
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.1e-78 296.6 157 89.8
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.1e-78 296.6 157 89.8
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 1.1e-78 296.6 157 89.8
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 1.5e-78 296.2 156 89.7
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 1.5e-78 296.2 156 92.3
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 1.5e-78 296.2 156 89.1
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 1.5e-78 296.2 156 90.4
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 2.5e-78 295.4 156 89.7
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 2.5e-78 295.4 156 90.4
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 2.5e-78 295.4 154 90.9
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 3.3e-78 295.0 157 89.2
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 3.3e-78 295.0 157 89.2
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 3.3e-78 295.0 157 89.2
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 3.3e-78 295.0 156 89.7
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 3.3e-78 295.0 157 88.5
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 4.3e-78 294.7 157 89.2
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 4.3e-78 294.7 156 90.4
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 4.3e-78 294.7 157 88.5
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 7.4e-78 293.9 156 89.1
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 9.6e-78 293.5 157 89.2
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 9.6e-78 293.5 157 89.2
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 9.6e-78 293.5 157 89.8
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 1.3e-77 293.1 154 89.6
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 1.3e-77 293.1 156 90.4
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 1.3e-77 293.1 156 90.4
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 1.3e-77 293.1 157 87.9
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.6e-77 292.7 155 89.0
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 1.6e-77 292.7 156 88.5
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 1.6e-77 292.7 156 88.5
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 1.6e-77 292.7 156 88.5
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 1.6e-77 292.7 156 88.5
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.1e-77 292.4 155 89.0
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 2.1e-77 292.4 156 89.1
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 2.1e-77 292.4 156 88.5
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 2.8e-77 292.0 156 89.1
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 2.8e-77 292.0 157 88.5
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 2.8e-77 292.0 157 88.5
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 2.8e-77 292.0 157 88.5
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 2.8e-77 292.0 156 89.7
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 6.2e-77 290.8 157 88.5
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 6.2e-77 290.8 157 88.5
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 8.1e-77 290.4 157 87.9
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 8.1e-77 290.4 157 87.9
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 8.1e-77 290.4 157 87.9
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 8.1e-77 290.4 157 87.9
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 8.1e-77 290.4 157 87.9
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 8.1e-77 290.4 157 87.9
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 8.1e-77 290.4 156 87.8
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 1.1e-76 290.0 156 88.5
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 1.1e-76 290.0 156 88.5
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 1.1e-76 290.0 157 87.9
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 1.1e-76 290.0 156 88.5
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 1.1e-76 290.0 156 88.5
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 1.1e-76 290.0 156 89.1
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 1.4e-76 289.7 157 87.3
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 1.8e-76 289.3 157 87.9
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 2.4e-76 288.9 157 85.4
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 2.4e-76 288.9 157 87.9
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 2.4e-76 288.9 157 87.3
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.4e-76 288.9 154 87.7
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 2.4e-76 288.9 151 90.1
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 4.0e-76 288.1 154 85.7
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 4.0e-76 288.1 154 85.7
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 5.3e-76 287.7 155 87.7
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 6.9e-76 287.3 154 87.7
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 1.5e-75 286.2 155 86.5
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 2.0e-75 285.8 157 86.6
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 1.3e-74 283.1 143 93.7
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 2.4e-73 278.9 154 84.4
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 1.9e-70 269.2 154 82.5
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 2.5e-70 268.9 154 83.1
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 7.9e-64 247.3 153 75.8
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 8.7e-63 243.8 153 74.5
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 1.1e-62 243.4 152 76.3
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.1e-62 243.4 153 75.2
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.5e-62 243.0 153 74.5
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 4.3e-62 241.5 151 74.8
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 9.7e-62 240.4 131 86.3
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 7.6e-59 230.7 152 72.4
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 1.1e-57 226.9 152 69.1
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 1.2e-56 223.4 156 71.2
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 5.7e-54 214.5 150 71.3
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 3.8e-50 201.8 151 67.5
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 4.2e-49 198.4 151 60.9
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 1.0e-47 193.7 159 59.1
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 5.9e-43 177.9 90 93.3
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 5.7e-38 161.4 152 51.3
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 1.1e-33 147.1 77 80.5
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.5e-30 136.7 78 84.6
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 7.5e-22 107.8 57 84.2
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 8.3e-21 104.4 54 96.3
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 2.9e-18 95.9 111 50.5
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 7.2e-17 91.3 53 86.8
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 7.8e-11 71.2 36 97.2
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 2.3e-10 69.7 44 81.8


User provided reference genes

Program Settings