Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000430 Carpinus fangiana HOM05D006296 ORTHO05D007777 2.5e-74 282.0 136 100.0
QL05p039836 Quercus lobata HOM05D006296 ORTHO05D007777 3.5e-60 235.0 136 77.9
arahy.Tifrunner.gnm1.ann1.6I4RI9 Arachis hypogaea HOM05D006296 ORTHO05D007777 5.6e-58 227.6 136 77.9
CiPaw.10G047400 Carya illinoinensis HOM05D006296 ORTHO05D007777 5.6e-58 227.6 136 80.9
Dinv07546 Davidia involucrata HOM05D006296 ORTHO05D007777 7.3e-58 227.3 140 73.6
Hma1.2p1_0126F.1_g059310 Hydrangea macrophylla HOM05D006296 ORTHO05D007777 9.6e-58 226.9 144 77.8
Duzib235G1545 Durio zibethinus HOM05D006296 ORTHO05D007777 1.8e-56 222.6 142 75.4
CsaV3_6G050070 Cucumis sativus L. HOM05D006296 ORTHO05D007777 3.1e-56 221.9 140 70.7
Manes.16G026200 Manihot esculenta HOM05D006296 ORTHO05D007777 9.0e-56 220.3 146 68.5
MELO3C007289.2 Cucumis melo HOM05D006296 ORTHO05D007777 1.2e-55 219.9 140 70.0
MD10G1295500 Malus domestica HOM05D006296 ORTHO05D007777 2.6e-55 218.8 136 72.1
MD05G1314200 Malus domestica HOM05D006296 ORTHO05D007777 3.4e-55 218.4 136 70.6
ECA247G1807 Erigeron canadensis HOM05D006296 ORTHO05D007777 4.4e-55 218.0 136 71.3
Lalb_Chr16g0383701 Lupinus albus HOM05D006296 ORTHO05D007777 4.4e-55 218.0 138 75.4
Glyma.13G180700 Glycine max HOM05D006296 ORTHO05D007777 7.6e-55 217.2 140 75.7
Phvul.006G187000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 7.6e-55 217.2 136 70.6
Duzib160G0870 Durio zibethinus HOM05D006296 ORTHO05D007777 9.9e-55 216.9 142 72.5
Nn1g04048 Nelumbo nucifera HOM05D006296 ORTHO05D007777 1.7e-54 216.1 137 70.1
Prupe.4G044900 Prunus persica HOM05D006296 ORTHO05D007777 2.9e-54 215.3 109 84.4
Glyma.07G195600 Glycine max HOM05D006296 ORTHO05D007777 6.4e-54 214.2 138 76.1
HanXRQChr01g0003901 Helianthus annuus HOM05D006296 ORTHO05D007777 1.1e-53 213.4 141 67.4
Lj6g0008813 Lotus japonicus HOM05D006296 ORTHO05D007777 1.1e-53 213.4 136 67.6
Psat7g112640 Pisum sativum HOM05D006296 ORTHO05D007777 1.9e-53 212.6 138 68.1
THA.LOC104812881 Tarenaya hassleriana HOM05D006296 ORTHO05D007777 1.9e-53 212.6 108 81.5
PSO675G2929 Papaver somniferum HOM05D006296 ORTHO05D007777 2.4e-53 212.2 138 68.1
Solyc10g009040.4 Solanum lycopersicum HOM05D006296 ORTHO05D007777 2.4e-53 212.2 142 66.2
Sopen10g004820 Solanum pennellii HOM05D006296 ORTHO05D007777 2.4e-53 212.2 142 66.2
TPR.G12044 Trifolium pratense HOM05D006296 ORTHO05D007777 3.2e-53 211.8 136 69.1
CSS0006104 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 4.2e-53 211.5 109 81.7
Thecc.06G189800 Theobroma cacao HOM05D006296 ORTHO05D007777 4.2e-53 211.5 139 71.2
Medtr4g088930 Medicago truncatula HOM05D006296 ORTHO05D007777 5.4e-53 211.1 109 78.9
RcHm_v2.0_Chr5g0008131 Rosa chinensis HOM05D006296 ORTHO05D007777 5.4e-53 211.1 136 69.9
BcaC09g51212 Brassica carinata HOM05D006296 ORTHO05D007777 9.3e-53 210.3 137 74.5
A01p13040 Brassica napus HOM05D006296 ORTHO05D007777 9.3e-53 210.3 137 74.5
C01p15710 Brassica napus HOM05D006296 ORTHO05D007777 9.3e-53 210.3 137 74.5
BolC1t01524H Brassica oleracea HOM05D006296 ORTHO05D007777 9.3e-53 210.3 137 74.5
BraA01t01246Z Brassica rapa HOM05D006296 ORTHO05D007777 9.3e-53 210.3 137 74.5
FvH4_3g09420 Fragaria vesca HOM05D006296 ORTHO05D007777 1.2e-52 209.9 136 69.9
FAN21G3093 Fragaria x ananassa HOM05D006296 ORTHO05D007777 1.6e-52 209.5 136 68.4
Ca_18536_v3 Cicer arietinum L. HOM05D006296 ORTHO05D007777 2.1e-52 209.1 105 80.0
Lsat_1_v5_gn_1_126121 Lactuca sativa HOM05D006296 ORTHO05D007777 2.7e-52 208.8 137 75.2
VMungo0251G3500 Vigna mungo HOM05D006296 ORTHO05D007777 3.5e-52 208.4 138 68.1
Eucgr.D00634 Eucalyptus grandis HOM05D006296 ORTHO05D007777 4.6e-52 208.0 137 71.5
Cc02_g13190 Coffea canephora HOM05D006296 ORTHO05D007777 7.8e-52 207.2 143 69.9
TWI38G1090 Tripterygium wilfordii HOM05D006296 ORTHO05D007777 1.0e-51 206.8 144 65.3
Gohir.A06G126500 Gossypium hirsutum HOM05D006296 ORTHO05D007777 1.7e-51 206.1 141 66.0
Gohir.D06G131300 Gossypium hirsutum HOM05D006296 ORTHO05D007777 1.7e-51 206.1 141 66.0
Gorai.010G153200 Gossypium raimondii HOM05D006296 ORTHO05D007777 1.7e-51 206.1 141 66.0
Aqoxy1G02520 Aquilegia oxysepala HOM05D006296 ORTHO05D007777 6.6e-51 204.1 140 65.7
CiPaw.09G058300 Carya illinoinensis HOM05D006296 ORTHO05D007777 6.6e-51 204.1 136 67.6
BcaNung00841 Brassica carinata HOM05D006296 ORTHO05D007777 1.1e-50 203.4 142 68.3
Nitab4.5_0003942g0060 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.1e-50 203.4 109 77.1
CANSAT35G0041 Cannabis sativa HOM05D006296 ORTHO05D007777 1.5e-50 203.0 136 66.9
Nitab4.5_0013250g0030 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.5e-50 203.0 142 62.7
Potri.004G041700 Populus trichocarpa HOM05D006296 ORTHO05D007777 1.9e-50 202.6 142 67.6
SEGI_22799 Sequoiadendron giganteum HOM05D006296 ORTHO05D007777 1.9e-50 202.6 136 62.5
EL10Ac8g20365 Beta vulgaris HOM05D006296 ORTHO05D007777 2.5e-50 202.2 136 61.8
BcaNung00839 Brassica carinata HOM05D006296 ORTHO05D007777 4.3e-50 201.4 106 77.4
Sc05g0007770 Simmondsia chinensis HOM05D006296 ORTHO05D007777 4.3e-50 201.4 137 62.8
FAN11G0154 Fragaria x ananassa HOM05D006296 ORTHO05D007777 5.6e-50 201.1 144 64.6
FAN08G1739 Fragaria x ananassa HOM05D006296 ORTHO05D007777 7.3e-50 200.7 132 67.4
Sp7g19880 Schrenkiella parvula HOM05D006296 ORTHO05D007777 7.3e-50 200.7 137 70.1
Os04g0680300 Oryza sativa ssp. japonica HOM05D006296 ORTHO05D007777 9.6e-50 200.3 139 64.7
BcaC06g30674 Brassica carinata HOM05D006296 ORTHO05D007777 1.6e-49 199.5 104 77.9
A03p52890 Brassica napus HOM05D006296 ORTHO05D007777 1.6e-49 199.5 104 77.9
BraA03t14365Z Brassica rapa HOM05D006296 ORTHO05D007777 1.6e-49 199.5 104 77.9
Hund21232 Selenicereus undatus HOM05D006296 ORTHO05D007777 3.6e-49 198.4 109 73.4
SGA_v2.0_scaffold49G18290 Striga asiatica HOM05D006296 ORTHO05D007777 3.6e-49 198.4 143 65.7
Thhalv10026538m.g Eutrema salsugineum HOM05D006296 ORTHO05D007777 1.4e-48 196.4 137 70.1
Atru.chr10.1908 Acer truncatum HOM05D006296 ORTHO05D007777 1.8e-48 196.1 107 73.8
AL7G32220 Arabidopsis lyrata HOM05D006296 ORTHO05D007777 6.9e-48 194.1 142 65.5
AT4G21720 Arabidopsis thaliana HOM05D006296 ORTHO05D007777 2.6e-47 192.2 142 62.7
BcaNung02241 Brassica carinata HOM05D006296 ORTHO05D007777 2.6e-47 192.2 132 63.6
CARHR228450 Cardamine hirsuta HOM05D006296 ORTHO05D007777 3.4e-47 191.8 136 67.6
Carub.0007s1968 Capsella rubella HOM05D006296 ORTHO05D007777 9.9e-47 190.3 137 62.8
FAN18G2724 Fragaria x ananassa HOM05D006296 ORTHO05D007777 9.9e-47 190.3 148 60.1
PSO541G0808 Papaver somniferum HOM05D006296 ORTHO05D007777 3.8e-46 188.3 179 52.5
MSTRG.15892 Avicennia marina HOM05D006296 ORTHO05D007777 8.4e-46 187.2 108 70.4
VMungo0540G1954 Vigna mungo HOM05D006296 ORTHO05D007777 8.4e-46 187.2 151 57.6
Aa31LG6G3700 Aethionema arabicum HOM05D006296 ORTHO05D007777 1.4e-45 186.4 157 61.1
Migut.M01153 Erythranthe guttata HOM05D006296 ORTHO05D007777 1.4e-45 186.4 109 71.6
Nitab4.5_0002158g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.4e-45 186.4 109 69.7
DCAR_018474 Daucus carota HOM05D006296 ORTHO05D007777 2.4e-45 185.7 103 77.7
Nn1g06589 Nelumbo nucifera HOM05D006296 ORTHO05D007777 2.4e-45 185.7 91 83.5
HPP92_014805 Vanilla planifolia HOM05D006296 ORTHO05D007777 1.2e-44 183.3 108 68.5
PGR004G1731 Punica granatum HOM05D006296 ORTHO05D007777 2.1e-44 182.6 137 63.5
Rhsim13G0176800 Rhododendron simsii HOM05D006296 ORTHO05D007777 2.1e-44 182.6 117 69.2
Solyc02g078430.3 Solanum lycopersicum HOM05D006296 ORTHO05D007777 4.6e-44 181.4 109 67.0
Sopen02g023280 Solanum pennellii HOM05D006296 ORTHO05D007777 7.9e-44 180.6 109 67.0
Zm00001eb065930 Zea mays HOM05D006296 ORTHO05D007777 5.1e-43 177.9 140 59.3
SalBow7G3743 Salvia bowleyana HOM05D006296 ORTHO05D007777 6.7e-43 177.6 173 52.6
Peaxi162Scf00530g00219 Petunia axillaris HOM05D006296 ORTHO05D007777 4.3e-42 174.9 182 46.7
Phvul.002G228000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 1.6e-41 172.9 140 59.3
CAN.G1164.13 Capsicum annuum HOM05D006296 ORTHO05D007777 2.1e-41 172.6 103 68.0
unitig_22.g6746 Utricularia gibba HOM05D006296 ORTHO05D007777 5.3e-40 167.9 107 59.8
ATR0680G190 Amborella trichopoda HOM05D006296 ORTHO05D007777 1.2e-39 166.8 110 65.5
Ciclev10017521m.g Citrus clementina HOM05D006296 ORTHO05D007777 2.6e-39 165.6 78 88.5
Sed0007841 Sechium edule HOM05D006296 ORTHO05D007777 1.3e-38 163.3 124 59.7
Nitab4.5_0005954g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.7e-38 162.9 109 63.3
Peaxi162Scf00736g00313 Petunia axillaris HOM05D006296 ORTHO05D007777 6.4e-38 161.0 109 65.1
Lj2A287T56 Lonicera japonica HOM05D006296 ORTHO05D007777 1.9e-37 159.5 115 65.2
arahy.Tifrunner.gnm1.ann1.F25ZWM Arachis hypogaea HOM05D006296 ORTHO05D007777 9.3e-37 157.1 78 80.8
Oeu005074.1 Olea europaea HOM05D006296 ORTHO05D007777 3.5e-36 155.2 123 67.5
Migut.H01493 Erythranthe guttata HOM05D006296 ORTHO05D007777 1.3e-35 153.3 102 53.9
Actinidia25618 Actinidia chinensis HOM05D006296 ORTHO05D007777 3.3e-34 148.7 90 74.4
GSVIVG01002932001 Vitis vinifera HOM05D006296 ORTHO05D007777 4.3e-34 148.3 83 77.1
Sabra11G0035100 Salix brachista HOM05D006296 ORTHO05D007777 5.6e-34 147.9 149 50.3
ClCG00G005210 Citrullus lanatus HOM05D006296 ORTHO05D007777 2.1e-28 129.4 96 63.5
ClCG01G022900 Citrullus lanatus HOM05D006296 ORTHO05D007777 2.1e-28 129.4 96 63.5
FvH4_5g20990 Fragaria vesca HOM05D006296 ORTHO05D007777 3.5e-28 128.6 101 61.4
Actinidia07582 Actinidia chinensis HOM05D006296 ORTHO05D007777 3.9e-27 125.2 65 81.5
Sabra04G0025800 Salix brachista HOM05D006296 ORTHO05D007777 1.1e-24 117.1 98 57.1
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.8e-24 116.3 63 76.2
AUR62014802 Chenopodium quinoa HOM05D006296 ORTHO05D007777 1.5e-23 113.2 65 70.8
AUR62016993 Chenopodium quinoa HOM05D006296 ORTHO05D007777 3.4e-23 112.1 65 70.8
CDE04G3708 Ceratophyllum demersum HOM05D006296 ORTHO05D007777 1.0e-22 110.5 96 56.2
AagrBONN_evm.TU.Sc2ySwM_362.1174 Anthoceros agrestis HOM05D006296 ORTHO05D007777 8.5e-22 107.5 94 46.8
Sed0020533 Sechium edule HOM05D006296 ORTHO05D007777 7.9e-20 100.9 65 63.1
PGSC0003DMG400022442 Solanum tuberosum HOM05D006296 ORTHO05D007777 6.9e-16 87.8 59 61.0
Haze_06487 Corylus avellana HOM05D006296 ORTHO05D007777 3.2e-13 79.0 38 89.5
MBI18_g17001_MAGBIO Magnolia biondii HOM05D006296 ORTHO05D007777 1.4e-08 63.5 61 57.4
Cpa.g.sc27.57 Carica papaya HOM05D006296 ORTHO05D007777 2.4e-08 62.8 62 46.8
CSS0025334 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 2.0e-07 59.7 31 77.4
PGSC0003DMG400022813 Solanum tuberosum HOM05D006296 ORTHO05D007777 3.4e-07 58.9 64 45.3
arahy.Tifrunner.gnm1.ann1.W44VBU Arachis hypogaea HOM05D043198 ORTHO05D007777 7.7e-07 57.8 32 68.8
C07p51340 Brassica napus HOM05D006296 ORTHO05D007777 2.9e-06 55.8 31 67.7


User provided reference genes

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