Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 0.0e+00 1277.3 656 100.0
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 0.0e+00 1227.2 656 95.3
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 1.4e-292 1009.2 655 78.9
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 5.3e-287 990.7 659 76.6
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 2.6e-278 961.8 658 74.3
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.4e-276 956.1 658 74.3
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 9.3e-276 953.4 656 73.2
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 7.4e-273 943.7 653 73.4
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 1.1e-271 939.9 652 72.2
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 3.2e-268 928.3 659 73.3
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 4.3e-265 917.9 656 70.7
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 9.7e-265 916.8 656 70.3
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 9.7e-265 916.8 653 71.1
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.8e-263 912.5 657 70.9
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 4.1e-263 911.4 660 70.2
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 5.3e-263 911.0 655 70.5
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.2e-262 909.8 657 70.5
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 4.5e-262 907.9 657 70.8
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 6.5e-261 904.0 655 70.4
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 5.5e-260 901.0 655 70.4
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 5.5e-260 901.0 656 69.5
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 7.9e-259 897.1 662 67.8
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 1.0e-258 896.7 659 69.7
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.5e-257 892.9 659 70.9
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 7.4e-257 890.6 655 68.2
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 7.4e-257 890.6 653 70.4
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.4e-255 886.3 653 69.7
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 1.2e-254 883.2 656 68.4
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.4e-254 881.7 653 69.7
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 7.7e-254 880.6 656 67.8
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 2.2e-253 879.0 658 68.8
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 2.9e-253 878.6 657 67.3
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 6.5e-253 877.5 659 68.0
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 1.1e-252 876.7 659 67.7
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 1.9e-252 875.9 658 67.8
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 2.5e-252 875.5 657 67.9
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 4.2e-252 874.8 656 67.8
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 7.2e-252 874.0 656 68.1
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 7.2e-252 874.0 662 67.4
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.6e-251 872.8 660 68.3
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 1.8e-250 869.4 662 67.1
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 2.3e-250 869.0 651 67.0
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 6.7e-250 867.5 653 68.1
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 7.4e-249 864.0 665 67.7
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 1.7e-248 862.8 657 67.7
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.2e-248 862.4 653 67.7
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 5.9e-246 854.4 650 66.3
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 5.9e-246 854.4 653 68.1
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 1.3e-245 853.2 658 65.3
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 2.2e-245 852.4 648 67.0
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 6.5e-245 850.9 653 66.8
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.9e-244 849.4 632 68.8
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 5.5e-244 847.8 659 65.9
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.4e-242 843.2 656 66.6
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 4.0e-242 841.6 678 63.7
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 5.2e-242 841.3 632 67.6
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 1.5e-241 839.7 652 66.1
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.4e-239 833.2 652 64.4
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 2.4e-239 832.4 660 65.8
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 9.1e-239 830.5 660 65.6
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 1.6e-238 829.7 666 63.7
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 1.0e-237 827.0 668 64.7
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 1.1e-236 823.5 655 62.9
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 3.2e-236 822.0 646 65.8
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 1.6e-235 819.7 656 63.9
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 2.1e-235 819.3 658 64.0
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 8.0e-235 817.4 506 82.0
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 1.0e-234 817.0 656 63.4
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 4.4e-233 811.6 658 63.1
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.1e-231 807.0 672 62.8
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 1.8e-231 806.2 653 63.7
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 3.1e-231 805.4 656 64.9
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 3.5e-230 802.0 658 63.2
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 7.7e-230 800.8 655 62.7
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 1.7e-229 799.7 661 62.3
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 8.6e-229 797.3 650 62.9
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 1.6e-227 793.1 653 62.9
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 2.1e-227 792.7 653 62.9
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 8.0e-227 790.8 653 62.8
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 8.0e-227 790.8 656 62.7
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 8.3e-224 780.8 656 61.7
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 8.3e-224 780.8 656 61.7
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 6.6e-221 771.2 654 61.0
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.6e-219 766.5 653 61.6
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.0e-217 759.6 653 58.0
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 4.4e-217 758.4 658 58.2
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 2.2e-216 756.1 651 63.3
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 1.2e-214 750.4 652 60.0
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 2.0e-214 749.6 647 58.0
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 1.2e-211 740.3 656 61.4
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 3.1e-210 735.7 653 59.3
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.7e-208 729.9 657 59.2
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 5.4e-207 724.9 664 55.7
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 1.7e-200 703.4 649 58.2
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 6.4e-200 701.4 683 53.4
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 6.8e-194 681.4 491 70.3
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 3.9e-189 665.6 655 53.1
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 1.6e-187 660.2 660 53.9
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 3.4e-185 652.5 661 53.1
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 5.1e-149 532.3 521 52.6
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.9e-143 513.8 419 63.5
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 1.6e-142 510.8 622 47.6
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.0e-136 491.5 375 66.9
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 4.7e-134 482.6 482 52.3
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 1.8e-130 470.7 365 64.4
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 1.2e-126 458.0 665 38.8
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 2.5e-111 407.1 656 36.3
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 3.6e-102 376.7 663 35.9
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.0e-96 358.6 508 41.1
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 2.3e-96 357.5 269 65.1
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.5e-95 354.8 284 61.3
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 3.4e-92 343.6 367 48.8
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 5.4e-74 283.1 761 28.5
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 3.5e-73 280.4 266 56.8
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 6.0e-73 279.6 349 44.1
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 2.2e-67 261.2 275 53.5
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 1.0e-64 252.3 710 27.5
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.1e-55 222.2 225 56.4
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 5.5e-34 150.2 236 37.3
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 7.2e-34 149.8 128 62.5
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 3.0e-32 144.4 82 80.5
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 7.2e-26 123.2 209 34.0
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.4e-24 119.0 101 51.5
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.3e-24 118.2 99 59.6
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 6.7e-24 116.7 215 35.8
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 4.4e-23 114.0 104 57.7
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.4e-21 109.0 76 68.4
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.8e-21 108.6 86 52.3
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.0e-19 102.8 65 76.9
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 5.5e-18 97.1 209 31.6
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 9.4e-18 96.3 88 51.1
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.7e-14 85.5 65 61.5
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 8.2e-14 83.2 104 44.2
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 2.7e-12 78.2 76 52.6
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 1.5e-10 72.4 98 43.9
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 7.5e-07 60.1 41 78.0
CDE05G1743 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 1.3e-06 59.3 47 57.4


User provided reference genes

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