Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 5.0e-243 844.0 409 100.0
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.1e-241 838.6 409 99.3
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.1e-229 799.7 409 94.6
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.0e-227 793.1 407 94.1
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 5.0e-227 790.8 409 93.9
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.2e-225 786.2 405 93.6
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 8.2e-222 773.5 406 91.1
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.4e-221 772.7 409 91.2
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 4.1e-221 771.2 406 91.4
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 4.1e-221 771.2 409 90.5
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 9.1e-221 770.0 409 90.7
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.2e-220 769.6 409 90.5
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.6e-220 769.2 409 89.5
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.6e-220 769.2 409 90.2
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.0e-220 768.8 409 90.0
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 3.5e-220 768.1 406 90.4
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 4.5e-220 767.7 406 90.9
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 4.5e-220 767.7 408 90.2
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 7.7e-220 766.9 409 89.7
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.0e-219 766.5 409 89.5
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.7e-219 765.8 409 90.0
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.9e-219 765.0 409 89.7
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 5.0e-219 764.2 409 89.7
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 1.1e-218 763.1 406 90.4
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.5e-218 762.7 406 90.1
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 3.2e-218 761.5 406 89.7
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 4.2e-218 761.1 407 88.9
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 7.2e-218 760.4 409 89.5
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 9.4e-218 760.0 406 89.7
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 9.4e-218 760.0 406 89.7
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.1e-217 758.8 406 89.7
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.7e-217 758.4 406 89.4
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 8.0e-217 756.9 409 88.3
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 8.0e-217 756.9 406 88.9
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 8.0e-217 756.9 409 88.3
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.0e-216 756.5 406 88.9
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.4e-216 756.1 406 89.2
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.8e-216 755.7 404 89.9
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.3e-216 755.4 406 88.9
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 2.3e-216 755.4 404 89.9
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 3.0e-216 755.0 406 88.9
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.0e-216 755.0 406 88.9
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 3.0e-216 755.0 406 88.7
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.0e-216 754.6 406 89.2
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 6.8e-216 753.8 409 87.3
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 1.2e-215 753.1 406 88.9
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.5e-215 752.7 410 88.0
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 1.5e-215 752.7 406 88.9
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 3.4e-215 751.5 409 86.3
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 4.4e-215 751.1 409 87.0
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 4.4e-215 751.1 409 88.5
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 5.7e-215 750.7 406 88.7
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 7.5e-215 750.4 409 88.0
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 9.8e-215 750.0 425 85.6
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.3e-214 749.6 404 87.9
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 1.3e-214 749.6 407 88.5
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 2.2e-214 748.8 406 88.2
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 2.2e-214 748.8 404 87.6
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 2.8e-214 748.4 410 88.0
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 2.8e-214 748.4 409 86.8
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 3.7e-214 748.0 405 87.2
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 6.3e-214 747.3 406 87.7
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 8.3e-214 746.9 409 87.3
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 8.3e-214 746.9 406 87.7
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 4.1e-213 744.6 448 81.9
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 5.4e-213 744.2 406 88.2
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 5.4e-213 744.2 406 87.9
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 5.4e-213 744.2 452 81.2
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 9.1e-213 743.4 404 86.6
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 1.6e-212 742.7 409 86.6
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.6e-212 742.7 421 85.5
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 2.0e-212 742.3 409 86.3
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 2.7e-212 741.9 404 86.6
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 3.5e-212 741.5 409 86.1
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 3.5e-212 741.5 406 87.4
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 7.7e-212 740.3 407 86.2
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 7.7e-212 740.3 404 86.4
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.7e-211 739.2 410 86.1
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.7e-211 739.2 409 84.4
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 2.3e-211 738.8 409 86.1
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 2.3e-211 738.8 405 87.2
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 2.3e-211 738.8 410 86.1
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 2.9e-211 738.4 409 86.3
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 5.0e-211 737.6 411 87.1
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 6.6e-211 737.3 409 84.8
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 6.6e-211 737.3 409 85.6
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 8.6e-211 736.9 409 85.6
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 1.9e-210 735.7 404 86.6
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 2.5e-210 735.3 409 85.8
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 2.5e-210 735.3 409 85.8
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 4.2e-210 734.6 409 85.3
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 9.5e-210 733.4 409 85.6
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.6e-209 732.6 409 83.9
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.1e-209 732.3 409 84.1
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 6.1e-209 730.7 410 85.6
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 6.1e-209 730.7 476 76.7
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 1.4e-208 729.6 410 85.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 1.4e-208 729.6 410 85.1
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.4e-208 729.6 436 81.9
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 3.0e-208 728.4 409 84.8
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 8.9e-208 726.9 406 85.7
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 1.2e-207 726.5 409 84.4
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 3.4e-207 724.9 396 87.4
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.3e-206 723.0 406 86.0
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 1.7e-206 722.6 406 85.2
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 8.3e-206 720.3 404 84.2
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 9.2e-205 716.8 406 83.5
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.0e-204 715.7 406 83.0
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 4.5e-204 714.5 377 90.7
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 8.6e-203 710.3 385 87.3
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 5.6e-202 707.6 452 75.7
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 5.6e-202 707.6 381 89.2
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 2.8e-201 705.3 520 69.8
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 5.2e-200 701.0 405 81.2
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 2.6e-199 698.7 415 82.2
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 6.4e-198 694.1 386 86.0
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 9.2e-197 690.3 413 80.6
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 2.0e-196 689.1 410 82.0
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 7.3e-194 680.6 358 91.3
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.1e-189 666.8 356 89.0
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 9.2e-189 663.7 409 76.5
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 1.7e-187 659.4 403 78.7
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 3.6e-185 651.7 358 86.6
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 4.0e-184 648.3 379 80.7
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 4.4e-183 644.8 406 78.6
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 6.4e-174 614.4 406 73.6
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 5.4e-173 611.3 404 71.3
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 7.8e-172 607.4 405 70.1
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 6.6e-171 604.4 380 72.9
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.6e-169 599.7 320 89.1
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 1.9e-162 576.2 376 71.5
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.9e-157 559.7 387 73.1
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 3.0e-155 552.4 409 68.5
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.2e-149 531.9 318 80.5
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.7e-145 518.8 310 82.9
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 7.1e-141 504.6 400 61.5
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.5e-130 470.3 283 82.0
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 1.3e-126 457.2 258 84.9
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 3.9e-123 445.7 368 60.9
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 5.9e-119 431.8 238 87.0
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 1.9e-117 426.8 385 55.3
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 4.4e-114 415.6 225 88.0
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 4.0e-107 392.5 239 79.1
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 6.8e-99 365.2 197 86.8
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 9.2e-80 301.6 404 43.6
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 2.9e-73 280.0 390 43.1
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 9.2e-72 275.0 180 73.9
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 6.2e-68 262.3 180 69.4
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 2.6e-58 230.3 141 74.5
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 4.4e-58 229.6 140 75.0
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 3.8e-57 226.5 124 85.5
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.4e-50 203.4 130 76.2
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 3.3e-21 107.1 128 48.4
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.1e-19 102.1 58 79.3
Eucgr.G00568 Eucalyptus grandis HOM05D006894 ORTHO05D008724 5.9e-10 69.7 338 23.4


User provided reference genes

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