Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 1.7e-70 269.2 136 100.0
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 5.5e-37 157.9 132 61.4
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 1.2e-36 156.8 137 58.4
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.6e-36 156.4 132 61.4
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 3.5e-36 155.2 135 62.2
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 1.0e-35 153.7 135 57.8
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.0e-35 153.7 135 63.0
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 5.1e-35 151.4 135 62.2
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 4.3e-34 148.3 141 58.9
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 7.4e-34 147.5 135 58.5
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 1.6e-33 146.4 135 55.6
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 2.1e-33 146.0 137 57.7
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 2.8e-33 145.6 137 56.2
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 2.8e-33 145.6 136 57.4
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 2.8e-33 145.6 140 57.1
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 6.2e-33 144.4 140 55.7
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 8.2e-33 144.1 132 55.3
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 8.2e-33 144.1 135 57.8
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 8.2e-33 144.1 138 57.2
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 1.1e-32 143.7 134 57.5
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 1.4e-32 143.3 137 56.2
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 4.0e-32 141.7 138 56.5
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 4.0e-32 141.7 127 59.1
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 5.3e-32 141.4 141 54.6
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 5.3e-32 141.4 136 56.6
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 5.3e-32 141.4 136 55.9
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 5.3e-32 141.4 111 63.1
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 6.9e-32 141.0 138 56.5
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 6.9e-32 141.0 137 57.7
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 1.5e-31 139.8 133 57.9
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 2.6e-31 139.0 135 54.8
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 2.6e-31 139.0 140 57.1
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 2.6e-31 139.0 135 54.1
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 5.8e-31 137.9 133 57.1
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 7.6e-31 137.5 135 54.1
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 1.0e-30 137.1 138 54.3
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 1.7e-30 136.3 159 49.7
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 2.2e-30 136.0 140 57.1
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 2.2e-30 136.0 137 54.7
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 2.9e-30 135.6 141 55.3
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 3.8e-30 135.2 137 54.0
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 3.8e-30 135.2 136 52.9
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 6.5e-30 134.4 137 53.3
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 8.4e-30 134.0 136 52.2
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.1e-29 133.7 132 52.3
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.1e-29 133.7 132 52.3
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 1.9e-29 132.9 134 49.3
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 1.9e-29 132.9 137 53.3
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 2.5e-29 132.5 140 53.6
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 2.5e-29 132.5 138 53.6
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 4.2e-29 131.7 139 51.8
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 4.2e-29 131.7 130 52.3
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 4.2e-29 131.7 137 54.7
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 5.5e-29 131.3 136 50.0
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 1.6e-28 129.8 139 56.1
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 1.6e-28 129.8 141 54.6
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 1.6e-28 129.8 160 48.1
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 2.1e-28 129.4 134 50.0
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 2.1e-28 129.4 134 50.7
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 3.5e-28 128.6 141 53.9
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 3.5e-28 128.6 91 68.1
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 6.0e-28 127.9 137 50.4
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 7.9e-28 127.5 141 50.4
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 1.0e-27 127.1 136 52.9
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 1.3e-27 126.7 137 49.6
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 1.8e-27 126.3 143 51.0
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.8e-27 126.3 134 52.2
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 8.7e-27 124.0 91 64.8
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 1.9e-26 122.9 142 48.6
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 4.3e-26 121.7 136 50.7
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 7.4e-26 120.9 134 48.5
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 9.7e-26 120.6 142 47.9
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 9.7e-26 120.6 127 52.0
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 2.2e-25 119.4 139 48.9
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 1.1e-24 117.1 111 55.0
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 1.4e-24 116.7 75 66.7
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 1.4e-24 116.7 137 51.1
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 1.2e-23 113.6 136 47.1
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 1.2e-23 113.6 136 47.1
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 1.5e-23 113.2 139 48.2
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 1.5e-23 113.2 76 64.5
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 7.6e-23 110.9 135 46.7
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 1.3e-22 110.2 133 47.4
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 1.3e-22 110.2 133 47.4
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 1.7e-22 109.8 138 47.1
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 1.7e-22 109.8 138 46.4
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 1.7e-22 109.8 139 48.2
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 1.7e-22 109.8 117 47.9
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 2.9e-22 109.0 137 47.4
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 2.9e-22 109.0 107 50.5
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 3.8e-22 108.6 138 44.9
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 1.1e-21 107.1 133 46.6
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 1.4e-21 106.7 138 49.3
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 1.9e-21 106.3 140 49.3
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 2.5e-21 105.9 135 45.9
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 1.2e-20 103.6 82 58.5
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 1.6e-20 103.2 80 60.0
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 1.6e-20 103.2 134 44.8
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 2.7e-20 102.4 131 45.8
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 2.7e-20 102.4 77 61.0
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 4.6e-20 101.7 93 54.8
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 4.6e-20 101.7 129 41.9
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 6.1e-20 101.3 74 62.2
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 6.1e-20 101.3 141 44.7
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 7.9e-20 100.9 131 41.2
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 1.0e-19 100.5 143 46.2
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 6.7e-19 97.8 133 44.4
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 8.8e-19 97.4 139 45.3
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 8.8e-19 97.4 108 52.8
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 1.5e-18 96.7 118 52.5
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 1.9e-18 96.3 73 57.5
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 1.9e-18 96.3 82 57.3
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 3.3e-18 95.5 118 50.8
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 2.8e-17 92.4 89 48.3
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 4.8e-17 91.7 117 47.0
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 6.9e-16 87.8 132 39.4
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 4.5e-15 85.1 119 50.4
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 1.7e-14 83.2 115 48.7
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 6.5e-14 81.3 70 52.9
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 3.2e-13 79.0 91 46.2
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 7.2e-13 77.8 122 41.8
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 7.2e-13 77.8 85 45.9
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 1.2e-12 77.0 122 37.7
Atru.chr1.3017 Acer truncatum HOM05D006427 ORTHO05D008147 3.9e-11 72.0 89 49.4
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 6.7e-11 71.2 66 53.0
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 4.8e-09 65.1 115 40.0
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 6.3e-09 64.7 116 36.2
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 1.0e-06 57.4 108 39.8


User provided reference genes

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