Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 2021.9 1033 100.0
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1531.9 1004 78.8
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1519.6 1004 78.1
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1471.4 1007 76.1
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1470.7 1027 74.9
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1468.4 1006 76.2
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1464.9 1010 75.7
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1463.0 1001 76.2
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1460.7 1010 75.6
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1456.4 1002 75.0
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1453.7 1009 74.3
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1453.3 1015 74.0
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1452.2 1006 74.0
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1452.2 1039 72.7
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1450.6 1006 75.0
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1449.1 1010 74.1
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1448.0 1004 74.6
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1447.2 1037 73.1
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1446.0 1003 74.5
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1445.3 1039 72.4
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1444.5 1006 75.6
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1439.9 1006 73.4
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1438.7 1040 71.7
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1436.0 1020 72.9
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1431.8 1035 71.7
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1428.3 1039 72.2
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1427.9 1007 72.7
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1427.5 1002 74.0
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1424.5 1001 74.0
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1422.1 1047 71.5
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1420.2 1035 71.6
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1417.9 1022 73.1
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1417.9 1022 73.1
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1417.9 1016 72.5
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1415.6 1014 72.6
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1414.4 1005 72.1
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1414.1 1007 73.6
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1409.8 1005 73.5
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1409.4 1058 70.0
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1407.1 1009 72.9
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1406.7 1030 70.3
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1397.9 1036 70.8
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1393.6 1004 70.9
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1390.6 1039 69.8
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1384.4 1039 70.0
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1383.6 1007 71.3
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1383.6 1020 70.1
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1381.3 1007 71.6
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1379.0 1019 71.8
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1378.2 1010 71.4
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1378.2 1031 69.9
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1377.5 1014 71.3
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1377.5 1028 70.7
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1377.1 1028 70.7
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1376.3 1019 70.9
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1375.5 1036 69.9
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1375.1 1015 70.5
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1375.1 1031 69.4
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1374.8 1016 70.3
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1373.6 1006 70.6
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1371.3 1014 70.0
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1367.8 1023 69.6
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1366.7 1010 71.1
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1364.4 1009 70.6
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1363.6 999 71.5
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1362.1 1016 70.4
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1360.9 1041 68.5
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1360.5 1024 68.8
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1358.2 1002 69.7
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1354.3 986 71.0
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1352.8 1004 70.6
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1351.7 1041 68.6
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1347.8 1018 69.9
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1347.8 1005 70.7
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1346.3 1031 68.8
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1344.3 1038 68.9
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1343.6 1016 70.0
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 1009 69.1
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1341.3 992 71.5
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1334.3 1009 69.3
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1333.5 1043 67.6
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1331.2 1016 69.5
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1330.5 1003 69.6
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1327.0 1049 67.7
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1323.9 1055 67.1
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1322.0 1012 67.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1317.0 1021 68.3
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1313.9 1012 68.8
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1312.4 1015 68.4
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1307.4 1018 67.7
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1305.0 1016 68.0
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1305.0 1004 69.2
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1305.0 1014 68.2
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1304.7 995 68.8
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1303.5 993 69.3
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1302.0 1015 68.3
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1300.4 991 68.2
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1300.4 1017 67.8
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1298.1 1017 67.6
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1298.1 917 72.8
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1297.0 1021 66.7
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1296.2 1021 66.6
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1294.3 1012 67.1
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1288.9 888 74.9
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1284.2 888 75.1
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1273.8 1028 66.3
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1263.8 911 73.0
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1251.5 1006 67.1
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1247.3 1011 65.5
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1245.3 986 67.4
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1245.0 1007 67.0
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1238.0 1011 64.8
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1235.7 1001 66.2
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1234.2 1026 64.4
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1231.5 1019 66.7
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1225.3 986 65.6
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1225.3 1021 66.4
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1216.4 1001 64.4
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1215.7 1055 63.6
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1177.2 1015 62.4
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1162.1 930 67.1
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1162.1 1075 60.3
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1148.7 1040 61.1
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1139.0 1044 61.2
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1119.8 1023 61.1
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1107.8 1002 60.5
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1102.4 1043 57.4
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1091.6 871 66.6
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 8.3e-303 1043.9 1040 59.1
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 3.0e-289 998.8 995 56.3
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 8.0e-282 974.2 893 57.6
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 9.2e-270 934.1 804 65.2
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 9.2e-270 934.1 718 71.2
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 5.1e-268 928.3 868 59.8
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 2.7e-253 879.4 735 66.4
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.6e-250 870.2 998 50.6
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.4e-247 857.8 971 49.1
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 4.2e-246 855.5 1035 48.9
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.6e-245 852.0 974 49.1
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.3e-236 823.9 1008 47.6
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 4.6e-221 772.3 839 51.4
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.1e-217 761.1 814 52.9
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.2e-205 721.1 909 47.2
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.7e-205 719.9 718 60.9
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 8.0e-197 691.8 636 60.7
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 4.7e-181 639.4 827 48.9
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 4.7e-173 612.8 951 40.8
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 3.2e-169 600.1 631 55.3
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.6e-152 544.7 624 51.0
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 6.0e-152 542.7 1178 35.8
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.1e-150 538.5 665 49.6
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.3e-143 515.0 594 51.2
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 2.6e-123 447.6 374 61.0
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.3e-119 434.5 316 72.2
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 4.0e-116 423.7 638 42.9
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 2.0e-107 394.8 540 45.2
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 8.5e-106 389.4 234 83.8
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 2.2e-93 348.2 266 68.4
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.4e-87 328.9 310 57.7
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 5.5e-73 280.4 720 34.0
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.7e-69 268.9 293 53.6
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.9e-52 212.2 518 30.9
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 3.5e-51 208.0 198 54.5
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.4e-46 191.4 158 59.5
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 8.3e-45 186.8 969 23.3
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.1e-44 186.4 168 58.9
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.0e-42 179.9 264 40.2
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.7e-42 179.1 149 63.1
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.6e-35 156.0 135 57.0
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 8.6e-34 150.2 239 43.1
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 4.7e-32 144.4 131 57.3
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 3.9e-26 124.8 158 44.9
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 7.3e-25 120.6 115 54.8
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 9.6e-25 120.2 122 51.6
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 4.0e-15 88.2 53 86.8
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 9.0e-15 87.0 63 74.6
Actinidia09594 Actinidia chinensis HOM05D003977 ORTHO05D004536 9.0e-07 60.5 47 70.2
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.5e-06 59.7 65 49.2
Actinidia33992 Actinidia chinensis HOM05D003977 ORTHO05D004536 2.0e-06 59.3 47 70.2


User provided reference genes

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