Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 1.3e-182 642.9 316 100.0
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 3.0e-123 445.7 304 68.4
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 1.2e-122 443.7 313 69.6
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 2.2e-121 439.5 312 68.9
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 6.3e-121 438.0 312 67.3
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 8.3e-121 437.6 314 67.2
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.1e-120 437.2 313 66.1
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 1.1e-120 437.2 313 67.1
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 1.8e-120 436.4 305 64.6
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 2.4e-120 436.0 311 66.6
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 3.2e-120 435.6 304 68.8
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.2e-119 433.7 312 66.3
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 1.2e-119 433.7 312 66.0
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 3.5e-119 432.2 290 72.8
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 4.5e-119 431.8 316 66.1
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 7.8e-119 431.0 299 67.2
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.9e-118 429.1 323 64.4
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 3.9e-118 428.7 312 69.9
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 5.0e-118 428.3 304 67.8
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 6.6e-118 427.9 323 64.1
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 1.5e-117 426.8 313 64.2
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 2.8e-116 422.5 344 61.6
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 3.6e-116 422.2 298 67.1
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 6.1e-116 421.4 314 64.0
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 6.1e-116 421.4 305 62.3
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.0e-115 420.6 312 65.7
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.4e-115 420.2 322 62.7
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.8e-115 419.9 312 65.7
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.8e-115 419.9 312 65.7
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 3.1e-115 419.1 301 66.1
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 8.9e-115 417.5 305 62.0
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 2.0e-114 416.4 311 63.3
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 2.6e-114 416.0 303 62.4
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 9.8e-114 414.1 305 66.2
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 1.7e-113 413.3 313 63.6
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 3.7e-113 412.1 303 62.0
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 4.9e-113 411.8 316 63.6
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 6.4e-113 411.4 314 63.4
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 8.3e-113 411.0 300 65.3
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 1.4e-112 410.2 290 68.6
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 3.2e-112 409.1 303 64.4
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.2e-111 407.1 300 63.0
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 1.6e-111 406.8 317 62.1
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 3.5e-111 405.6 303 60.4
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 4.6e-111 405.2 304 62.2
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 3.9e-110 402.1 304 64.8
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 8.6e-110 401.0 300 65.0
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 2.1e-108 396.4 310 60.3
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 4.7e-108 395.2 300 63.7
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 1.8e-107 393.3 300 64.3
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 2.3e-107 392.9 298 64.1
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 5.2e-107 391.7 316 59.2
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 6.8e-107 391.3 302 60.6
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 1.2e-106 390.6 277 66.8
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 1.3e-105 387.1 303 60.1
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 2.9e-105 386.0 303 59.4
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 2.9e-105 386.0 303 59.4
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 2.9e-105 386.0 303 59.4
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 2.9e-105 386.0 303 59.4
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 6.4e-105 384.8 305 59.3
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 8.3e-105 384.4 299 60.2
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.1e-104 384.0 300 60.7
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 1.1e-104 384.0 308 58.8
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 1.4e-104 383.6 303 59.7
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 2.1e-103 379.8 292 62.3
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 3.5e-103 379.0 303 59.7
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 3.5e-103 379.0 292 62.0
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 6.0e-103 378.3 297 58.9
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 1.0e-102 377.5 296 59.8
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 5.1e-102 375.2 303 59.1
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 5.1e-102 375.2 299 59.2
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 4.3e-101 372.1 309 61.5
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 4.3e-101 372.1 384 52.1
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 3.1e-99 365.9 313 58.8
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 8.9e-99 364.4 286 60.5
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 1.5e-98 363.6 287 60.3
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 1.5e-98 363.6 287 60.3
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 3.5e-95 352.4 325 54.2
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 5.6e-93 345.1 249 67.5
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.2e-92 344.0 314 52.9
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 4.0e-91 339.0 331 55.0
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 8.9e-91 337.8 249 64.7
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 5.8e-90 335.1 279 60.9
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 1.2e-87 327.4 307 52.8
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 3.9e-86 322.4 207 71.5
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 9.6e-85 317.8 294 54.4
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 1.8e-83 313.5 278 58.3
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 2.4e-80 303.1 313 54.0
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 2.7e-79 299.7 250 60.4
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 7.8e-79 298.1 289 50.5
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.7e-78 297.0 279 54.8
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.9e-77 293.5 217 64.1
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 1.2e-74 284.3 314 47.5
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 3.2e-72 276.2 240 56.2
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 3.0e-70 269.6 221 56.6
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 3.3e-69 266.2 212 59.9
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.1e-67 261.2 202 67.3
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.5e-66 257.3 194 68.0
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 1.0e-65 254.6 296 45.9
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.6e-63 247.3 230 54.8
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 9.6e-61 238.0 383 37.3
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.6e-60 237.3 195 61.5
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.8e-60 236.5 194 61.9
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.2e-60 235.0 187 61.5
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.1e-59 234.6 194 61.9
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.8e-59 233.8 186 62.4
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.1e-59 233.0 186 61.8
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.1e-55 218.8 194 59.3
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.4e-51 207.6 195 56.9
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 5.9e-50 202.2 186 54.3
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 1.4e-48 197.6 288 40.6
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 8.8e-46 188.3 297 38.0
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.2e-44 181.8 199 49.7
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 6.9e-43 178.7 104 76.0
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.0e-42 177.2 106 75.5
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.5e-42 176.0 106 74.5
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 2.7e-39 166.8 180 47.2
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 3.7e-36 156.4 189 43.4
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.0e-35 152.1 120 64.2
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.5e-34 149.4 112 64.3
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 5.9e-34 149.1 102 68.6
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 1.0e-30 138.3 125 53.6
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.4e-30 137.9 109 63.3
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 1.5e-29 134.4 272 33.5
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.2e-26 124.8 109 56.0
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 6.5e-25 119.0 291 30.6
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.9e-24 117.5 62 82.3
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 2.1e-15 87.4 85 44.7
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 2.1e-15 87.4 94 44.7
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 8.8e-14 82.0 42 83.3
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 1.1e-08 65.1 101 42.6
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.6e-07 60.1 35 71.4


User provided reference genes

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