Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 6.1e-302 1040.0 528 100.0
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 3.5e-225 785.0 526 75.1
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 4.6e-225 784.6 528 73.9
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 1.4e-221 773.1 534 72.5
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 9.0e-221 770.4 528 73.1
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 1.2e-220 770.0 528 72.5
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 1.5e-220 769.6 528 74.1
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 4.5e-220 768.1 528 72.5
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 4.5e-220 768.1 528 72.5
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 4.9e-219 764.6 529 71.6
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 8.4e-219 763.8 529 72.2
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 3.2e-218 761.9 528 72.7
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 8.7e-216 753.8 528 72.9
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 8.7e-216 753.8 528 70.3
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 1.6e-214 749.6 528 70.8
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 2.8e-214 748.8 526 73.2
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 3.7e-214 748.4 528 72.5
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 1.1e-213 746.9 528 72.9
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 1.1e-213 746.9 526 73.2
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 2.0e-212 742.7 526 73.0
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 2.6e-212 742.3 531 71.0
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 4.5e-212 741.5 529 71.8
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 1.3e-211 740.0 530 71.1
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 6.5e-211 737.6 528 71.6
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 1.9e-210 736.1 531 71.4
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 2.5e-210 735.7 528 71.2
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 9.4e-210 733.8 539 69.9
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 1.2e-209 733.4 532 70.9
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 1.6e-209 733.0 531 70.6
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 2.7e-209 732.3 528 70.3
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 3.6e-209 731.9 528 70.1
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.0e-208 730.3 528 69.9
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 3.9e-208 728.4 529 70.1
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 5.1e-208 728.0 528 69.7
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 8.8e-208 727.2 528 70.5
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 3.3e-207 725.3 516 71.5
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 6.3e-206 721.1 531 69.5
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.1e-205 718.8 528 69.1
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 4.1e-205 718.4 528 68.6
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 5.3e-205 718.0 526 68.6
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 2.6e-204 715.7 531 69.1
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 2.9e-203 712.2 531 68.4
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 2.9e-203 712.2 516 70.7
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 3.8e-203 711.8 529 69.2
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 5.0e-203 711.4 529 68.2
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 6.5e-203 711.1 526 68.3
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 1.2e-201 706.8 571 64.3
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 3.6e-201 705.3 529 68.2
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 2.3e-200 702.6 518 68.5
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 5.1e-200 701.4 528 67.6
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 2.0e-199 699.5 534 67.6
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 9.7e-199 697.2 581 63.3
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 1.7e-198 696.4 528 67.6
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 2.4e-197 692.6 530 67.2
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 3.1e-197 692.2 526 65.6
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 4.1e-197 691.8 530 67.0
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.3e-195 686.8 527 66.8
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 1.3e-195 686.8 516 67.4
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 5.0e-195 684.9 532 66.7
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 6.5e-195 684.5 526 65.6
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.9e-194 682.9 527 66.4
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 1.9e-194 682.9 529 65.8
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 4.2e-194 681.8 558 65.8
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 1.2e-193 680.2 532 66.5
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 3.6e-193 678.7 519 66.7
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 6.1e-193 677.9 539 65.9
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 8.0e-193 677.6 531 66.7
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.8e-192 676.4 529 66.0
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 6.7e-192 674.5 528 66.7
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 2.6e-191 672.5 528 65.9
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 4.4e-191 671.8 538 65.6
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 5.7e-191 671.4 500 69.2
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 9.7e-191 670.6 532 66.4
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 9.7e-191 670.6 531 65.7
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 2.2e-190 669.5 528 64.4
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 2.8e-190 669.1 531 65.5
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 4.8e-190 668.3 531 65.2
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.4e-189 666.8 527 66.2
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.8e-189 666.4 528 66.3
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 2.4e-189 666.0 528 66.9
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 2.2e-187 659.4 531 65.3
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 3.8e-187 658.7 482 70.1
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 8.5e-187 657.5 519 65.7
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 1.9e-186 656.4 529 64.7
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 3.2e-186 655.6 529 64.7
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 1.6e-185 653.3 529 64.5
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.6e-185 653.3 529 64.8
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 2.7e-185 652.5 528 65.2
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 6.1e-185 651.4 519 65.7
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.3e-184 649.4 531 65.5
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 2.3e-184 649.4 527 63.9
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 5.2e-184 648.3 549 63.0
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 2.6e-183 646.0 528 61.7
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 7.5e-183 644.4 521 64.7
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 2.8e-182 642.5 527 63.8
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 6.3e-182 641.3 541 61.9
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 3.2e-178 629.0 528 63.8
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 5.2e-176 621.7 522 61.5
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 4.8e-174 615.1 526 62.4
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 1.8e-173 613.2 521 61.6
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 1.3e-171 607.1 442 69.9
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 8.6e-171 604.4 444 69.6
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 8.0e-169 597.8 528 60.2
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 3.0e-168 595.9 531 58.2
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 2.0e-164 583.2 528 57.4
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 9.5e-162 574.3 442 66.3
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 4.0e-160 568.9 528 57.8
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 6.6e-155 551.6 462 64.5
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 5.1e-147 525.4 510 55.5
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 4.7e-137 492.3 352 69.9
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 1.2e-129 467.6 466 56.0
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 2.4e-125 453.4 392 58.9
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 7.8e-124 448.4 543 47.5
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 9.0e-120 434.9 526 46.8
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 9.0e-120 434.9 402 57.7
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 7.6e-111 405.2 520 44.2
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 8.7e-107 391.7 480 49.2
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 3.7e-97 359.8 485 44.1
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.4e-56 224.9 140 77.9
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 2.5e-53 214.2 452 36.9
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 6.6e-46 189.5 128 73.4
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 8.0e-36 156.0 273 38.5
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 5.8e-34 149.8 150 58.7
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 9.9e-26 122.5 80 75.0
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 3.5e-23 114.0 73 71.2
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 1.0e-22 112.5 78 66.7
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 6.6e-22 109.8 111 54.1
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-20 105.1 144 38.2
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 2.4e-19 101.3 71 69.0
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 2.4e-19 101.3 75 62.7
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 1.3e-14 85.5 259 29.0
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 3.8e-09 67.4 78 51.3
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-09 67.0 53 54.7
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 1.2e-07 62.4 40 80.0


User provided reference genes

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