Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 8.2e-82 307.0 154 100.0
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.1e-52 208.8 155 67.1
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.1e-52 208.8 154 66.2
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 1.2e-51 206.8 154 66.2
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 1.2e-51 206.8 154 66.2
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 1.2e-51 206.8 154 66.2
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.0e-51 206.1 154 65.6
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 2.6e-51 205.7 159 70.4
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.6e-51 205.7 155 66.5
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 4.4e-51 204.9 154 66.2
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 5.8e-51 204.5 156 69.2
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 7.5e-51 204.1 154 65.6
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 9.8e-51 203.8 156 69.2
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 9.8e-51 203.8 156 69.2
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 9.8e-51 203.8 157 67.5
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.7e-50 203.0 156 68.6
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.9e-50 202.2 156 68.6
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.9e-50 202.2 156 68.6
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.9e-50 202.2 156 68.6
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 3.7e-50 201.8 157 68.8
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 6.4e-50 201.1 156 68.6
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 6.4e-50 201.1 156 67.9
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 8.3e-50 200.7 156 67.3
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 7.0e-49 197.6 156 64.1
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 4.6e-48 194.9 154 65.6
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 6.0e-48 194.5 161 66.5
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 6.0e-48 194.5 156 63.5
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.0e-47 193.7 156 64.7
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 8.6e-47 190.7 156 64.7
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 2.5e-46 189.1 156 63.5
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 4.3e-46 188.3 159 62.9
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 5.6e-46 188.0 150 66.0
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 7.3e-46 187.6 158 65.8
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 9.5e-46 187.2 156 63.5
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 1.6e-45 186.4 151 66.9
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 2.1e-45 186.0 157 64.3
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 2.8e-45 185.7 158 63.9
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 3.6e-45 185.3 156 64.1
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 6.2e-45 184.5 156 62.2
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 8.1e-45 184.1 155 63.9
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 8.1e-45 184.1 155 63.9
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.1e-44 183.7 158 60.1
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 1.8e-44 183.0 156 62.8
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.8e-44 183.0 158 61.4
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 1.8e-44 183.0 158 61.4
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 4.0e-44 181.8 156 60.9
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 6.8e-44 181.0 159 61.0
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 6.8e-44 181.0 157 61.8
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 8.9e-44 180.6 154 63.0
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 8.9e-44 180.6 154 62.3
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 8.9e-44 180.6 157 63.1
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 1.2e-43 180.3 154 55.8
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 1.5e-43 179.9 153 57.5
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 3.4e-43 178.7 157 61.1
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 4.4e-43 178.3 157 60.5
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 4.4e-43 178.3 156 59.0
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 7.5e-43 177.6 157 59.9
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 9.8e-43 177.2 157 59.9
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 9.8e-43 177.2 158 59.5
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 1.7e-42 176.4 158 60.8
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 1.7e-42 176.4 132 67.4
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 3.7e-42 175.3 158 60.1
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 3.7e-42 175.3 158 60.1
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 3.7e-42 175.3 158 60.1
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 3.7e-42 175.3 158 60.1
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 4.9e-42 174.9 158 60.1
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 4.9e-42 174.9 156 59.0
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 4.9e-42 174.9 157 61.1
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 8.3e-42 174.1 158 59.5
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 8.3e-42 174.1 158 61.4
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.4e-41 173.3 156 59.0
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 1.4e-41 173.3 173 56.6
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.4e-41 173.3 170 51.2
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 2.4e-41 172.6 130 68.5
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.4e-41 172.6 158 62.0
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 7.1e-41 171.0 157 61.1
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 9.2e-41 170.6 158 56.3
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 9.2e-41 170.6 158 56.3
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 9.2e-41 170.6 130 67.7
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 6.0e-40 167.9 129 62.0
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 6.0e-40 167.9 156 55.1
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 7.8e-40 167.5 129 65.9
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.0e-39 167.2 157 55.4
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.0e-39 167.2 155 56.1
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 1.0e-39 167.2 132 61.4
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 3.9e-39 165.2 160 55.6
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 6.6e-39 164.5 133 63.2
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 6.6e-39 164.5 154 58.4
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 1.1e-38 163.7 158 57.0
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 1.5e-38 163.3 158 57.0
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 1.5e-38 163.3 125 68.8
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 3.3e-38 162.2 158 56.3
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 5.6e-38 161.4 156 55.8
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.2e-37 160.2 146 58.9
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.2e-35 153.7 155 54.2
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 3.4e-35 152.1 155 54.2
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 1.7e-34 149.8 155 53.5
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 2.1e-32 142.9 141 53.2
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 4.6e-32 141.7 147 52.4
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 6.0e-32 141.4 162 49.4
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 6.0e-32 141.4 162 49.4
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.3e-31 140.2 137 56.2
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.1e-30 137.1 132 56.1
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 9.6e-30 134.0 152 52.0
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 2.1e-29 132.9 125 58.4
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 3.1e-28 129.0 110 58.2
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 8.9e-28 127.5 87 70.1
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 1.7e-26 123.2 106 62.3
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 2.9e-26 122.5 118 58.5
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 6.4e-26 121.3 106 61.3
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 1.7e-23 113.2 99 63.6
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 3.3e-22 109.0 80 62.5
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.3e-22 108.6 91 58.2
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 1.1e-20 104.0 97 54.6
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 5.8e-19 98.2 95 61.1
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 7.1e-17 91.3 87 58.6
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 6.0e-16 88.2 138 47.1
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 2.8e-13 79.3 108 43.5
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 6.2e-13 78.2 68 52.9
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 9.9e-11 70.9 105 46.7
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.3e-10 70.5 124 39.5
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 6.4e-10 68.2 54 59.3
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 8.4e-10 67.8 46 65.2
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 8.4e-10 67.8 123 35.0
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 6.0e-08 61.6 63 46.0
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 1.0e-07 60.8 65 43.1
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 1.3e-07 60.5 65 43.1
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 1.8e-07 60.1 63 44.4
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.5e-06 57.0 124 37.9


User provided reference genes

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