Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 2.8e-103 380.2 556 100.0
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 2.0e-16 91.7 81 59.3
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 1.7e-15 88.6 66 65.2
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 1.4e-14 85.5 52 73.1
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 4.1e-14 84.0 160 38.1
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 2.0e-13 81.6 65 63.1
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 2.7e-13 81.3 91 50.5
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 2.9e-12 77.8 58 63.8
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 2.9e-12 77.8 76 52.6
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 1.1e-11 75.9 58 63.8
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 1.1e-11 75.9 91 49.5
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 1.9e-11 75.1 81 49.4
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 2.5e-11 74.7 76 50.0
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 2.5e-11 74.7 91 48.4
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 2.5e-11 74.7 89 50.6
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 5.5e-11 73.6 69 52.2
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 5.5e-11 73.6 73 54.8
HPP92_008353 Vanilla planifolia HOM05D006705 ORTHO05D008179 5.5e-11 73.6 50 66.0
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 7.2e-11 73.2 69 53.6
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 2.7e-10 71.2 59 62.7
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 2.7e-10 71.2 59 62.7
CiPaw.06G020600 Carya illinoinensis HOM05D007456 ORTHO05D009411 4.7e-10 70.5 60 58.3
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 6.1e-10 70.1 76 52.6
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 8.0e-10 69.7 50 62.0
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 8.0e-10 69.7 50 62.0
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 1.0e-09 69.3 64 51.6
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 1.0e-09 69.3 43 72.1
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 2.3e-09 68.2 137 37.2
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 2.3e-09 68.2 64 51.6
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.3e-09 68.2 66 50.0
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 4.0e-09 67.4 58 55.2
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 4.0e-09 67.4 58 55.2
SalBow4G3145 Salvia bowleyana HOM05D007456 ORTHO05D009411 4.0e-09 67.4 51 60.8
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 6.8e-09 66.6 64 51.6
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 6.8e-09 66.6 74 48.6
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 8.8e-09 66.2 73 47.9
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.2e-08 65.9 58 53.4
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.2e-08 65.9 58 53.4
FAN01G1025 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.5e-08 65.5 60 53.3
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 1.5e-08 65.5 60 58.3
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 2.0e-08 65.1 48 62.5
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 2.0e-08 65.1 72 45.8
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 2.6e-08 64.7 89 44.9
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 3.4e-08 64.3 64 53.1
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 5.7e-08 63.5 47 61.7
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 5.7e-08 63.5 73 45.2
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 9.8e-08 62.8 64 51.6
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 9.8e-08 62.8 64 51.6
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 9.8e-08 62.8 44 61.4
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 1.3e-07 62.4 64 51.6
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.3e-07 62.4 50 56.0
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 1.3e-07 62.4 50 56.0
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 1.3e-07 62.4 47 59.6
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 1.3e-07 62.4 50 56.0
Migut.F00108 Erythranthe guttata HOM05D007456 ORTHO05D009411 1.7e-07 62.0 72 48.6
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.7e-07 62.0 42 64.3
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 1.7e-07 62.0 44 63.6
Manes.08G164911 Manihot esculenta HOM05D007456 ORTHO05D009411 2.2e-07 61.6 86 45.3
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 2.8e-07 61.2 72 50.0
SGA_v2.0_scaffold44G16881 Striga asiatica HOM05D007456 ORTHO05D009411 2.8e-07 61.2 57 52.6
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 4.8e-07 60.5 44 63.6
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 4.8e-07 60.5 44 56.8
Sc19g0000290 Simmondsia chinensis HOM05D007456 ORTHO05D009411 4.8e-07 60.5 76 50.0
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 4.8e-07 60.5 43 60.5
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 8.3e-07 59.7 43 58.1
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 1.4e-06 58.9 70 50.0
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 1.4e-06 58.9 58 55.2
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.4e-06 58.9 45 60.0
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 1.4e-06 58.9 42 59.5
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 1.4e-06 58.9 42 59.5
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 1.4e-06 58.9 48 54.2
Lsat_1_v5_gn_2_37640 Lactuca sativa HOM05D007456 ORTHO05D009411 1.8e-06 58.5 84 44.0
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 1.8e-06 58.5 44 61.4
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 1.8e-06 58.5 41 61.0
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 1.8e-06 58.5 40 62.5
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 2.4e-06 58.2 43 60.5
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 2.4e-06 58.2 49 55.1
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 3.1e-06 57.8 105 40.0
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 3.1e-06 57.8 40 65.0
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 3.1e-06 57.8 42 59.5
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 3.1e-06 57.8 58 53.4
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 4.1e-06 57.4 73 45.2
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 4.1e-06 57.4 58 51.7
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 4.1e-06 57.4 105 40.0
AT5G36300 Arabidopsis thaliana HOM05D007456 ORTHO05D009411 5.4e-06 57.0 46 58.7
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 5.4e-06 57.0 57 47.4
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 7.0e-06 56.6 38 63.2
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 9.1e-06 56.2 75 45.3


User provided reference genes

Program Settings