Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 6.9e-199 697.2 378 100.0
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 4.9e-136 488.4 356 74.4
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 6.4e-136 488.0 354 73.7
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 2.1e-134 483.0 353 72.2
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 5.1e-133 478.4 360 70.8
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 8.6e-133 477.6 356 71.3
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 7.3e-132 474.6 360 71.1
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 1.2e-131 473.8 356 76.7
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 2.1e-131 473.0 326 74.2
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 3.6e-131 472.2 355 71.5
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 2.4e-130 469.5 353 70.5
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 5.2e-130 468.4 353 72.5
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 5.2e-130 468.4 361 70.6
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 2.0e-129 466.5 358 71.2
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 2.6e-129 466.1 353 68.8
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 5.8e-129 464.9 336 73.8
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 7.6e-129 464.5 357 70.9
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 7.6e-129 464.5 360 70.8
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 9.9e-129 464.2 353 71.4
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 2.9e-128 462.6 353 68.3
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 6.4e-128 461.5 354 77.7
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 6.4e-128 461.5 314 77.1
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 1.1e-127 460.7 353 71.4
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 1.4e-127 460.3 302 77.2
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.4e-127 460.3 353 68.6
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 1.9e-127 459.9 357 75.4
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 1.9e-127 459.9 360 74.2
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.4e-127 459.5 353 68.8
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 2.4e-127 459.5 355 69.9
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 4.6e-126 455.3 348 70.7
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.3e-125 453.8 337 72.1
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 2.3e-125 453.0 299 87.3
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 8.7e-125 451.1 326 71.8
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 1.1e-124 450.7 319 73.0
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 4.3e-124 448.7 334 72.5
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 5.6e-124 448.4 355 74.1
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 7.3e-124 448.0 286 81.5
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 7.3e-124 448.0 353 68.0
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 9.6e-124 447.6 353 69.4
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 1.3e-123 447.2 295 86.8
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 1.3e-123 447.2 305 75.7
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 1.3e-123 447.2 301 75.7
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 2.8e-123 446.0 353 67.7
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 2.8e-123 446.0 344 70.6
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 4.8e-123 445.3 353 67.4
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 4.8e-123 445.3 357 67.5
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 6.2e-123 444.9 357 66.9
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 1.4e-122 443.7 359 67.1
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.4e-122 443.7 346 67.9
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 1.4e-122 443.7 355 74.1
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 2.4e-122 443.0 353 67.7
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 4.0e-122 442.2 319 72.4
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 1.5e-121 440.3 353 66.9
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 4.5e-121 438.7 315 73.7
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 5.8e-121 438.3 353 67.1
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 6.4e-120 434.9 356 66.9
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 8.4e-120 434.5 355 72.7
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 1.4e-119 433.7 316 79.1
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 4.2e-119 432.2 377 62.9
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 4.2e-119 432.2 298 81.5
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 1.2e-118 430.6 357 71.4
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.6e-118 430.3 355 72.1
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 2.1e-118 429.9 353 65.2
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 2.7e-118 429.5 355 72.1
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 4.6e-118 428.7 355 71.8
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 7.9e-118 427.9 350 65.4
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.0e-117 427.6 355 71.8
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 1.3e-117 427.2 299 73.6
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 2.3e-117 426.4 312 72.8
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 2.3e-117 426.4 312 72.8
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 3.0e-117 426.0 310 73.2
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 3.9e-117 425.6 297 73.7
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 3.9e-117 425.6 298 73.2
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 3.9e-117 425.6 346 67.9
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 5.1e-117 425.2 355 72.1
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 1.1e-116 424.1 303 74.6
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 1.5e-116 423.7 299 73.2
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 1.9e-116 423.3 300 73.0
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 1.9e-116 423.3 304 71.4
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 2.5e-116 422.9 298 71.5
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 5.6e-116 421.8 295 74.2
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 5.6e-116 421.8 362 66.6
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 1.6e-115 420.2 296 73.0
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 4.8e-115 418.7 306 71.6
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 8.1e-115 417.9 299 72.2
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 8.1e-115 417.9 299 72.2
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 8.1e-115 417.9 340 67.6
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 1.1e-114 417.5 296 73.0
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 1.1e-114 417.5 296 73.0
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 1.4e-114 417.2 310 70.0
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 1.4e-114 417.2 299 80.9
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 1.8e-114 416.8 299 71.9
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 3.1e-114 416.0 306 72.9
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 4.0e-114 415.6 295 73.6
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 4.0e-114 415.6 329 67.2
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 9.0e-114 414.5 327 69.1
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 2.0e-113 413.3 306 79.4
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 7.6e-113 411.4 355 71.8
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 2.2e-112 409.8 304 76.3
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 2.9e-112 409.5 292 74.7
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 4.9e-112 408.7 330 66.1
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.4e-111 407.1 303 78.5
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 4.2e-111 405.6 303 78.2
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 5.1e-109 398.7 357 63.9
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 1.9e-108 396.7 265 76.2
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 2.5e-108 396.4 328 64.9
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 5.6e-108 395.2 294 76.5
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.4e-106 390.6 345 69.0
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 4.5e-105 385.6 239 84.1
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 9.0e-98 361.3 302 63.2
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 1.2e-97 360.9 337 59.6
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 1.6e-94 350.5 296 64.2
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 6.1e-94 348.6 312 60.9
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 6.7e-93 345.1 257 70.0
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 1.1e-92 344.4 268 66.8
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 1.1e-92 344.4 260 68.8
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 2.0e-89 333.6 259 65.3
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 6.5e-88 328.6 306 69.0
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 1.8e-85 320.5 353 55.0
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 1.7e-83 313.9 245 68.2
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 1.8e-77 293.9 254 59.4
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 1.8e-74 283.9 252 58.3
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 1.2e-70 271.2 177 81.9
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 4.8e-67 259.2 297 52.9
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 1.2e-65 254.6 287 48.4
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.0e-64 251.5 189 73.5
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 9.1e-58 228.4 169 68.0
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 1.4e-50 204.5 143 72.7
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 1.1e-42 178.3 100 90.0
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 1.3e-35 154.8 101 78.2
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 1.3e-35 154.8 101 78.2
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 8.6e-32 142.1 103 67.0
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 5.6e-31 139.4 118 57.6
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 9.5e-23 112.1 226 38.1
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.3e-19 101.7 60 85.0
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 1.2e-12 78.6 43 83.7
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 2.4e-10 70.9 192 26.0


User provided reference genes

Program Settings