Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 2.2e-136 490.7 240 100.0
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 6.9e-53 213.4 253 46.2
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 6.5e-51 206.8 245 46.5
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.4e-50 205.7 259 44.0
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 4.6e-49 200.7 215 47.9
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 6.3e-46 190.3 241 46.1
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.2e-44 186.0 212 46.2
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 1.2e-44 186.0 223 47.1
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 2.6e-44 184.9 227 45.8
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 4.5e-44 184.1 225 45.3
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 4.6e-41 174.1 258 40.3
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 8.7e-40 169.9 249 44.6
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 2.2e-38 165.2 244 40.6
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 4.8e-38 164.1 215 41.4
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 6.3e-38 163.7 235 41.7
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 8.2e-38 163.3 170 49.4
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 8.2e-38 163.3 245 40.4
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 1.4e-37 162.5 245 40.4
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 1.4e-37 162.5 162 50.0
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 5.3e-37 160.6 141 56.7
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 2.0e-36 158.7 146 52.7
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 3.4e-36 157.9 131 57.3
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 1.1e-34 152.9 235 37.9
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 1.4e-34 152.5 247 40.5
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 5.5e-34 150.6 254 37.0
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.2e-33 149.4 164 43.9
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 6.1e-33 147.1 198 43.9
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 6.1e-33 147.1 202 43.6
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 2.0e-31 142.1 210 39.5
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 2.5e-31 141.7 216 40.7
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 7.4e-31 140.2 132 50.0
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 9.7e-31 139.8 200 40.5
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 2.2e-30 138.7 131 51.1
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 2.2e-30 138.7 191 41.4
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 2.8e-30 138.3 208 39.4
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 3.7e-30 137.9 208 38.9
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 1.4e-29 136.0 185 40.0
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 1.4e-29 136.0 145 46.9
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 2.4e-29 135.2 215 37.7
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 1.2e-28 132.9 189 42.3
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 2.0e-28 132.1 225 35.1
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 2.6e-28 131.7 202 40.1
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 5.9e-28 130.6 212 39.6
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 1.7e-27 129.0 199 36.7
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 1.4e-26 125.9 159 39.6
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 4.2e-26 124.4 189 42.3
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 7.2e-26 123.6 163 38.0
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 1.6e-25 122.5 227 34.8
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 1.6e-25 122.5 227 34.8
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.7e-25 121.7 199 36.7
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.3e-24 118.6 228 34.6
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 3.0e-24 118.2 211 35.5
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 3.0e-24 118.2 146 43.2
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 3.9e-24 117.9 225 34.7
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 6.7e-24 117.1 229 34.1
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 8.8e-24 116.7 125 45.6
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 2.6e-23 115.2 171 42.1
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 2.6e-23 115.2 171 42.1
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 3.3e-23 114.8 163 36.8
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 3.3e-23 114.8 163 36.8
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 7.4e-23 113.6 164 36.6
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 9.7e-23 113.2 227 34.4
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 9.7e-23 113.2 153 41.8
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 9.7e-23 113.2 130 40.8
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.3e-22 112.8 163 37.4
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 1.3e-22 112.8 166 40.4
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 2.8e-22 111.7 158 38.0
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 3.7e-22 111.3 115 50.4
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 6.3e-22 110.5 206 34.5
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 1.8e-21 109.0 134 41.8
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 4.1e-21 107.8 194 34.5
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 7.0e-21 107.1 195 33.3
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.2e-20 106.3 133 41.4
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.2e-20 106.3 207 33.8
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 2.6e-20 105.1 145 42.8
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 5.9e-20 104.0 215 31.2
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 7.7e-20 103.6 228 32.9
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 2.2e-19 102.1 219 30.6
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 2.2e-19 102.1 131 40.5
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.9e-19 101.7 215 36.3
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 2.9e-19 101.7 105 47.6
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 6.5e-19 100.5 159 36.5
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 8.5e-19 100.1 152 33.6
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.1e-18 99.8 207 33.3
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 1.5e-18 99.4 141 39.0
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 1.5e-18 99.4 185 32.4
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 5.5e-18 97.4 115 45.2
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 9.4e-18 96.7 137 39.4
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 1.2e-17 96.3 181 35.9
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 1.6e-17 95.9 219 33.3
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 3.6e-17 94.7 215 31.2
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 8.0e-17 93.6 134 38.1
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 1.0e-16 93.2 158 34.8
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 4.0e-16 91.3 159 35.8
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 6.7e-16 90.5 256 29.7
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 8.8e-16 90.1 138 40.6
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 7.5e-15 87.0 110 44.5
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 1.3e-14 86.3 173 33.5
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 3.5e-12 78.2 114 39.5
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 2.9e-11 75.1 164 31.7
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 2.5e-10 72.0 117 40.2
Cpa.g.sc190.19 Carica papaya HOM05D007212 ORTHO05D009094 9.4e-10 70.1 243 24.3
Gorai.003G135500 Gossypium raimondii HOM05D007212 ORTHO05D009094 3.6e-09 68.2 205 26.3
SGA_v2.0_scaffold169G38601 Striga asiatica HOM05D007496 ORTHO05D009479 3.6e-09 68.2 166 31.9
Thecc.09G326300 Theobroma cacao HOM05D007212 ORTHO05D009094 1.4e-08 66.2 221 28.1
THA.LOC104814860 Tarenaya hassleriana HOM05D007212 ORTHO05D009094 1.8e-08 65.9 192 25.5
Lsat_1_v5_gn_9_22380 Lactuca sativa HOM05D007212 ORTHO05D009094 2.6e-07 62.0 175 26.3
HPP92_012737 Vanilla planifolia HOM05D007496 ORTHO05D009479 4.4e-07 61.2 159 28.9
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 7.5e-07 60.5 157 29.3
GSVIVG01025017001 Vitis vinifera HOM05D007212 ORTHO05D009094 9.8e-07 60.1 207 25.1
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 1.7e-06 59.3 157 29.3
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 2.2e-06 58.9 157 29.3
Migut.L00784 Erythranthe guttata HOM05D007496 ORTHO05D009479 2.8e-06 58.5 199 28.1
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 3.7e-06 58.2 157 29.3
SGA_v2.0_scaffold4G02164 Striga asiatica HOM05D007496 ORTHO05D009479 3.7e-06 58.2 165 29.1
Ah.16g102100 Amaranthus hybridus HOM05D007347 ORTHO05D009296 4.8e-06 57.8 176 25.6
Sabra16G0142600 Salix brachista HOM05D007212 ORTHO05D009094 6.3e-06 57.4 163 24.5
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 8.3e-06 57.0 152 28.3


User provided reference genes

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