Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 2.1e-58 229.2 147 100.0
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 3.2e-51 205.3 147 91.8
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 8.8e-41 170.6 136 82.4
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.5e-40 169.9 145 77.9
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 9.7e-40 167.2 145 77.2
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.1e-38 163.7 144 76.4
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 1.8e-38 162.9 137 78.1
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 3.1e-38 162.2 137 81.0
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 3.1e-38 162.2 146 78.8
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 5.3e-38 161.4 137 76.6
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 7.0e-38 161.0 137 77.4
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 2.0e-37 159.5 138 76.1
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 2.0e-37 159.5 137 76.6
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 2.6e-37 159.1 145 75.2
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 2.6e-37 159.1 145 75.2
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 5.9e-37 157.9 141 73.0
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 1.3e-36 156.8 145 73.8
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 2.2e-36 156.0 143 72.7
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 5.0e-36 154.8 137 75.9
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 6.5e-36 154.5 144 75.0
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 6.5e-36 154.5 140 52.9
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 1.1e-35 153.7 133 73.7
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.1e-35 153.7 137 74.5
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 3.2e-35 152.1 137 70.8
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 3.2e-35 152.1 137 75.9
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.5e-35 151.4 137 76.6
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 5.5e-35 151.4 134 74.6
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 5.5e-35 151.4 134 74.6
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 9.4e-35 150.6 137 70.1
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 9.4e-35 150.6 134 76.1
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 1.2e-34 150.2 136 77.2
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 1.6e-34 149.8 88 77.3
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.6e-34 149.8 144 65.3
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 1.6e-34 149.8 130 80.0
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 2.1e-34 149.4 137 62.0
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 2.7e-34 149.1 140 72.9
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 3.6e-34 148.7 130 75.4
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 4.7e-34 148.3 133 74.4
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 6.1e-34 147.9 130 74.6
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 8.0e-34 147.5 137 74.5
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 1.4e-33 146.7 140 75.0
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 2.3e-33 146.0 137 73.0
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 3.0e-33 145.6 137 74.5
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 1.2e-32 143.7 137 67.9
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 1.2e-32 143.7 137 72.3
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 1.5e-32 143.3 137 70.1
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 1.5e-32 143.3 132 73.5
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 3.3e-32 142.1 138 69.6
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 3.3e-32 142.1 138 70.3
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 9.7e-32 140.6 133 73.7
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 9.7e-32 140.6 138 62.3
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 1.3e-31 140.2 134 71.6
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 1.7e-31 139.8 137 72.3
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 1.7e-31 139.8 138 71.0
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 2.2e-31 139.4 137 71.5
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 2.2e-31 139.4 147 68.7
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 2.2e-31 139.4 138 68.8
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 2.8e-31 139.0 138 71.0
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 3.7e-31 138.7 137 68.6
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 6.3e-31 137.9 133 72.2
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 8.2e-31 137.5 134 60.4
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 1.1e-30 137.1 137 67.2
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.4e-30 136.7 133 72.9
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 1.8e-30 136.3 132 53.8
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 3.1e-30 135.6 129 74.4
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 3.1e-30 135.6 130 73.1
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 4.1e-30 135.2 133 71.4
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 7.0e-30 134.4 121 78.5
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 7.0e-30 134.4 137 67.9
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 7.0e-30 134.4 137 67.9
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 2.0e-29 132.9 137 67.9
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 3.5e-29 132.1 130 73.8
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 3.5e-29 132.1 126 72.2
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 1.0e-28 130.6 89 68.5
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 1.7e-28 129.8 137 67.2
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 1.7e-28 129.8 126 72.2
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 2.9e-28 129.0 123 74.8
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 5.0e-28 128.3 129 71.3
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 5.0e-28 128.3 127 74.8
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 1.1e-27 127.1 133 67.7
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 1.9e-27 126.3 137 64.2
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 7.2e-27 124.4 124 47.6
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 9.4e-27 124.0 78 73.1
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 9.4e-27 124.0 137 55.5
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 2.1e-26 122.9 121 75.2
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.1e-26 122.9 148 59.5
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 4.7e-26 121.7 140 57.1
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 8.0e-26 120.9 140 60.7
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 1.0e-25 120.6 83 59.0
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 1.4e-25 120.2 132 69.7
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 3.4e-24 115.5 126 64.3
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 1.3e-23 113.6 128 63.3
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 1.3e-23 113.6 128 63.3
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 1.7e-23 113.2 112 75.0
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.7e-23 113.2 128 62.5
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 2.2e-23 112.8 140 40.0
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 2.8e-23 112.5 128 62.5
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 4.8e-23 111.7 79 58.2
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 1.4e-22 110.2 134 58.2
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 1.4e-22 110.2 142 38.7
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 4.1e-22 108.6 128 60.9
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 2.7e-21 105.9 116 48.3
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 2.3e-20 102.8 123 61.8
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 2.3e-20 102.8 132 53.0
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 3.8e-20 102.1 119 57.1
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.1e-19 100.5 106 76.4
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 2.5e-19 99.4 127 57.5
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 7.2e-19 97.8 100 79.0
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 7.2e-19 97.8 135 54.8
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 7.2e-19 97.8 135 54.8
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 2.1e-18 96.3 135 54.8
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 2.3e-17 92.8 140 42.1
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 1.2e-16 90.5 116 54.3
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 9.8e-16 87.4 95 64.2
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 8.3e-15 84.3 131 49.6
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 3.5e-13 79.0 121 33.1
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 3.5e-13 79.0 118 34.7
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 3.5e-13 79.0 118 34.7
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 3.5e-13 79.0 118 34.7
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 7.8e-13 77.8 62 53.2
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 1.0e-12 77.4 120 33.3
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 1.0e-12 77.4 120 33.3
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 2.9e-12 75.9 153 32.0
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 3.8e-12 75.5 125 49.6
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 8.6e-12 74.3 120 31.7
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 5.2e-09 65.1 58 51.7
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 6.8e-09 64.7 105 30.5
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 4.4e-08 62.0 97 48.5
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 7.5e-08 61.2 73 42.5
Hma1.2p1_1820F.1_g304180 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.2e-07 59.7 66 89.4
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 1.9e-06 56.6 137 40.1
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.0e-06 54.7 78 38.5


User provided reference genes

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