Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 3.2e-77 292.0 179 100.0
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.0e-51 207.2 147 91.8
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.1e-40 168.7 144 76.4
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.6e-39 166.0 144 75.7
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 7.7e-39 164.5 140 77.9
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.4e-37 160.2 139 78.4
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.4e-37 160.2 139 78.4
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 3.2e-37 159.1 138 75.4
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 5.5e-37 158.3 137 74.5
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 5.5e-37 158.3 137 76.6
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 7.2e-37 157.9 138 74.6
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 1.2e-36 157.1 137 74.5
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 1.2e-36 157.1 139 77.0
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 1.2e-36 157.1 140 76.4
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 1.6e-36 156.8 139 72.7
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 2.1e-36 156.4 137 74.5
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.6e-36 155.6 141 72.3
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 6.1e-36 154.8 144 74.3
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 6.1e-36 154.8 139 75.5
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 7.9e-36 154.5 144 74.3
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 1.0e-35 154.1 135 54.1
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 3.0e-35 152.5 132 77.3
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 6.7e-35 151.4 138 61.6
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 6.7e-35 151.4 140 75.0
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 8.8e-35 151.0 135 76.3
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 8.8e-35 151.0 132 72.7
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 8.8e-35 151.0 88 76.1
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 8.8e-35 151.0 131 78.6
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.5e-34 150.2 144 72.2
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 4.4e-34 148.7 138 72.5
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.3e-33 147.1 137 67.9
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 1.7e-33 146.7 133 73.7
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 2.2e-33 146.4 137 67.9
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 2.2e-33 146.4 150 61.3
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.8e-33 146.0 140 69.3
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 2.8e-33 146.0 130 74.6
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 3.7e-33 145.6 132 75.8
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 6.3e-33 144.8 133 72.2
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 6.3e-33 144.8 135 76.3
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.1e-32 144.1 137 69.3
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.1e-32 144.1 137 69.3
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 1.8e-32 143.3 137 70.8
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 1.8e-32 143.3 134 69.4
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 2.4e-32 142.9 139 69.1
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 3.1e-32 142.5 141 69.5
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 4.1e-32 142.1 135 71.1
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 5.3e-32 141.7 135 73.3
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 7.0e-32 141.4 138 68.8
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 1.2e-31 140.6 135 73.3
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 2.0e-31 139.8 135 74.1
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 2.0e-31 139.8 139 68.3
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 2.6e-31 139.4 147 62.6
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 2.6e-31 139.4 140 70.0
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 2.6e-31 139.4 139 69.8
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 5.9e-31 138.3 144 67.4
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 7.7e-31 137.9 139 69.8
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 7.7e-31 137.9 135 72.6
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 1.0e-30 137.5 134 60.4
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 1.0e-30 137.5 138 67.4
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 1.3e-30 137.1 139 66.9
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 1.7e-30 136.7 129 75.2
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 2.9e-30 136.0 135 60.7
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 5.0e-30 135.2 140 67.1
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 6.5e-30 134.8 122 74.6
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 8.5e-30 134.4 122 77.0
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 1.1e-29 134.0 130 67.7
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 1.1e-29 134.0 139 68.3
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.5e-29 133.7 134 68.7
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.5e-29 133.7 134 68.7
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 1.9e-29 133.3 134 69.4
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 2.5e-29 132.9 123 74.0
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 2.5e-29 132.9 130 53.1
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 1.2e-28 130.6 129 70.5
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.1e-28 129.8 122 75.4
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 2.1e-28 129.8 135 68.9
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 3.6e-28 129.0 89 66.3
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 3.6e-28 129.0 134 67.9
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 8.0e-28 127.9 139 69.8
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 8.0e-28 127.9 138 64.5
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 3.0e-27 125.9 143 65.0
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 3.9e-27 125.6 127 70.1
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 8.8e-27 124.4 124 46.8
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 1.1e-26 124.0 133 58.6
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 1.5e-26 123.6 121 76.0
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 3.3e-26 122.5 132 71.2
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 7.4e-26 121.3 78 70.5
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 7.4e-26 121.3 137 53.3
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 6.3e-25 118.2 148 57.4
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 8.2e-25 117.9 80 60.0
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 8.2e-25 117.9 126 65.1
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 1.4e-24 117.1 143 58.0
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 7.0e-24 114.8 79 60.8
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 9.1e-24 114.4 127 65.4
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 1.6e-23 113.6 120 67.5
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.6e-23 113.6 127 64.6
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 2.0e-23 113.2 142 39.4
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 2.0e-23 113.2 127 64.6
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 2.9e-22 109.4 127 63.0
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 5.0e-22 108.6 140 37.1
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 1.1e-21 107.5 113 70.8
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 3.2e-21 105.9 134 56.7
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 7.2e-21 104.8 123 61.0
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 1.6e-20 103.6 119 58.0
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 3.6e-20 102.4 113 46.9
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 8.0e-20 101.3 119 57.1
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 2.3e-19 99.8 137 54.7
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 6.8e-19 98.2 135 61.5
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 1.5e-18 97.1 151 51.0
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.0e-18 96.7 80 50.0
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.0e-18 96.7 80 50.0
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 2.2e-17 93.2 140 42.1
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 2.2e-17 93.2 101 75.2
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 2.0e-15 86.7 116 51.7
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 2.7e-15 86.3 96 62.5
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 1.3e-14 84.0 132 50.8
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 1.1e-13 80.9 118 35.6
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 1.1e-13 80.9 118 35.6
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 1.1e-13 80.9 118 35.6
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 1.9e-13 80.1 69 52.2
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 2.5e-13 79.7 121 33.9
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 4.2e-13 79.0 120 34.2
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 4.2e-13 79.0 120 34.2
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 7.2e-13 78.2 125 50.4
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 8.0e-12 74.7 108 39.8
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 1.4e-11 73.9 119 31.9
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 6.3e-09 65.1 110 30.9
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 4.1e-08 62.4 92 48.9
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.6e-07 60.5 58 46.6
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 7.7e-07 58.2 140 39.3
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.9e-06 56.2 72 38.9
Hma1.2p1_1820F.1_g304180 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.9e-06 56.2 65 87.7


User provided reference genes

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