Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g01210 Coffea canephora HOM05D000051 ORTHO05D000015 1.6e-158 562.8 290 100.0
Dinv40730 Davidia involucrata HOM05D000051 ORTHO05D000015 2.0e-20 104.0 269 33.1
QL05p074475 Quercus lobata HOM05D000051 ORTHO05D000015 6.4e-19 99.0 271 32.5
Glyma.15G242400 Glycine max HOM05D000051 ORTHO05D000015 3.2e-18 96.7 297 30.6
Oeu007604.1 Olea europaea HOM05D000051 ORTHO05D000015 6.0e-17 92.4 286 28.7
Lj3g0017701 Lotus japonicus HOM05D000051 ORTHO05D000015 7.8e-17 92.0 308 29.2
QL05p074592 Quercus lobata HOM05D000051 ORTHO05D000015 1.0e-16 91.7 294 27.6
QL01p041888 Quercus lobata HOM05D000051 ORTHO05D000015 1.3e-16 91.3 238 32.4
Dinv17822 Davidia involucrata HOM05D000051 ORTHO05D000015 3.9e-16 89.7 263 29.3
Sopen07g032410 Solanum pennellii HOM05D000051 ORTHO05D000015 5.1e-16 89.4 253 30.8
Lj3g0005297 Lotus japonicus HOM05D000051 ORTHO05D000015 1.1e-15 88.2 303 30.0
Lj3g0010579 Lotus japonicus HOM05D000051 ORTHO05D000015 1.1e-15 88.2 303 30.4
Glyma.15G242200 Glycine max HOM05D000051 ORTHO05D000015 1.5e-15 87.8 296 29.4
Hma1.2p1_1609F.1_g293440 Hydrangea macrophylla HOM05D000051 ORTHO05D000015 1.9e-15 87.4 269 32.0
Phvul.005G065100 Phaseolus vulgaris HOM05D000051 ORTHO05D000015 1.9e-15 87.4 295 31.9
QL01p041777 Quercus lobata HOM05D000051 ORTHO05D000015 1.9e-15 87.4 266 30.8
Dinv18383 Davidia involucrata HOM05D000051 ORTHO05D008292 5.6e-15 85.9 256 30.5
Lj3g0004141 Lotus japonicus HOM05D000051 ORTHO05D000015 5.6e-15 85.9 251 30.3
QL05p074545 Quercus lobata HOM05D000051 ORTHO05D000015 9.6e-15 85.1 287 27.5
Migut.M01792 Erythranthe guttata HOM05D000051 ORTHO05D000015 1.3e-14 84.7 257 28.8
Rhsim04G0001300 Rhododendron simsii HOM05D000051 ORTHO05D000015 2.8e-14 83.6 270 31.5
Medtr2g072530 Medicago truncatula HOM05D000051 ORTHO05D000015 3.6e-14 83.2 291 26.1
Aqoxy1G03331 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 1.1e-13 81.6 256 27.7
VMungo1080G0675 Vigna mungo HOM05D000051 ORTHO05D000015 1.4e-13 81.3 288 29.2
arahy.Tifrunner.gnm1.ann1.GLFE0R Arachis hypogaea HOM05D000051 ORTHO05D000015 3.1e-13 80.1 276 27.2
Cfa000227 Carpinus fangiana HOM05D000051 ORTHO05D000015 3.1e-13 80.1 286 27.6
Lj3g0017405 Lotus japonicus HOM05D000051 ORTHO05D000015 4.0e-13 79.7 279 28.7
TPR.G6826 Trifolium pratense HOM05D000051 ORTHO05D000015 4.0e-13 79.7 289 26.3
HanXRQChr13g0407771 Helianthus annuus HOM05D000051 ORTHO05D000015 6.9e-13 79.0 262 28.6
Cfa000258 Carpinus fangiana HOM05D000051 ORTHO05D000015 1.2e-12 78.2 239 28.9
RcHm_v2.0_Chr5g0069781 Rosa chinensis HOM05D000051 ORTHO05D000015 1.2e-12 78.2 276 29.7
Lj3g0021941 Lotus japonicus HOM05D000051 ORTHO05D000015 2.6e-12 77.0 258 29.8
QL01p041755 Quercus lobata HOM05D000051 ORTHO05D000015 2.6e-12 77.0 263 30.0
TWI38G0777 Tripterygium wilfordii HOM05D000051 ORTHO05D000015 2.6e-12 77.0 269 27.5
Aqoxy6G02477 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 3.4e-12 76.6 259 29.7
CAN.G337.100 Capsicum annuum HOM05D000051 ORTHO05D000015 3.4e-12 76.6 253 29.6
Lj3g0014741 Lotus japonicus HOM05D000051 ORTHO05D000015 3.4e-12 76.6 276 30.8
arahy.Tifrunner.gnm1.ann1.45LTGK Arachis hypogaea HOM05D000051 ORTHO05D000015 4.5e-12 76.3 293 25.6
Cfa000226 Carpinus fangiana HOM05D000051 ORTHO05D000015 5.8e-12 75.9 263 27.4
Medtr2g072720 Medicago truncatula HOM05D000051 ORTHO05D000015 7.6e-12 75.5 230 31.3
PGR042G0305 Punica granatum HOM05D000051 ORTHO05D000015 7.6e-12 75.5 268 26.9
TWI38G0404 Tripterygium wilfordii HOM05D000051 ORTHO05D000015 7.6e-12 75.5 269 28.6
CSS0034448 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 9.9e-12 75.1 237 26.6
Cfa000229 Carpinus fangiana HOM05D000051 ORTHO05D000015 9.9e-12 75.1 234 30.8
Cfa007373 Carpinus fangiana HOM05D000051 ORTHO05D000015 9.9e-12 75.1 242 30.2
Lj3g0000880 Lotus japonicus HOM05D000051 ORTHO05D000015 9.9e-12 75.1 270 28.5
Prupe.4G024600 Prunus persica HOM05D000051 ORTHO05D000015 9.9e-12 75.1 272 27.2
MSTRG.15164 Avicennia marina HOM05D000051 ORTHO05D000015 1.3e-11 74.7 284 27.1
Lj3g0011429 Lotus japonicus HOM05D000051 ORTHO05D000015 1.3e-11 74.7 265 28.3
Cfa000228 Carpinus fangiana HOM05D000051 ORTHO05D000015 1.7e-11 74.3 234 29.5
QL01p041819 Quercus lobata HOM05D000051 ORTHO05D000015 1.7e-11 74.3 235 28.1
TPR.G16802 Trifolium pratense HOM05D000051 ORTHO05D000015 2.9e-11 73.6 285 27.0
TPR.G6877 Trifolium pratense HOM05D000051 ORTHO05D000015 3.8e-11 73.2 264 27.3
Cfa000255 Carpinus fangiana HOM05D000051 ORTHO05D000015 4.9e-11 72.8 274 26.6
Oeu057149.1 Olea europaea HOM05D000312 ORTHO05D000221 6.4e-11 72.4 236 30.9
PSO478G2955 Papaver somniferum HOM05D000051 ORTHO05D000015 1.9e-10 70.9 277 27.4
RcHm_v2.0_Chr5g0003811 Rosa chinensis HOM05D000051 ORTHO05D000015 1.9e-10 70.9 237 27.4
VMungo1080G0904 Vigna mungo HOM05D000051 ORTHO05D000015 1.9e-10 70.9 249 28.9
VMungo1215G1023 Vigna mungo HOM05D000051 ORTHO05D000015 1.9e-10 70.9 247 27.1
Glyma.17G194900 Glycine max HOM05D000051 ORTHO05D000015 3.2e-10 70.1 250 28.8
QL08p012538 Quercus lobata HOM05D000051 ORTHO05D000015 5.4e-10 69.3 271 28.0
Aqoxy4G01938 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 7.1e-10 68.9 267 24.7
Lj1g0022871 Lotus japonicus HOM05D000051 ORTHO05D000015 9.3e-10 68.6 266 27.8
Lj3g0027587 Lotus japonicus HOM05D000051 ORTHO05D000015 9.3e-10 68.6 276 29.0
Aqoxy1G01789 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 1.2e-09 68.2 272 27.6
PSO017G2530 Papaver somniferum HOM05D000051 ORTHO05D000015 1.2e-09 68.2 269 28.3
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 2.1e-09 67.4 260 29.6
Glyma.17G193700 Glycine max HOM05D000051 ORTHO05D000015 2.1e-09 67.4 268 26.9
CSS0010373 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.7e-09 67.0 270 26.3
Solyc07g064260.2 Solanum lycopersicum HOM05D000051 ORTHO05D000015 2.7e-09 67.0 175 29.1
vmacro09739 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 2.7e-09 67.0 263 27.8
arahy.Tifrunner.gnm1.ann1.NSP7CP Arachis hypogaea HOM05D000051 ORTHO05D000015 4.6e-09 66.2 243 28.0
Phvul.005G070500 Phaseolus vulgaris HOM05D000051 ORTHO05D000015 4.6e-09 66.2 249 25.3
Rhsim04G0037500 Rhododendron simsii HOM05D000051 ORTHO05D000015 4.6e-09 66.2 239 25.5
TPR.G4055 Trifolium pratense HOM05D000051 ORTHO05D000015 4.6e-09 66.2 259 24.7
AT3G14710 Arabidopsis thaliana HOM05D000051 ORTHO05D000015 6.0e-09 65.9 271 24.7
Potri.011G024200 Populus trichocarpa HOM05D000051 ORTHO05D000015 7.9e-09 65.5 291 28.9
Ca_03848_v3 Cicer arietinum L. HOM05D000051 ORTHO05D000015 1.3e-08 64.7 255 28.6
TPR.G16809 Trifolium pratense HOM05D000051 ORTHO05D000015 1.3e-08 64.7 279 26.2
Carub.0003s1437 Capsella rubella HOM05D000051 ORTHO05D000015 1.8e-08 64.3 267 24.3
Ca_16248_v3 Cicer arietinum L. HOM05D000051 ORTHO05D000015 1.8e-08 64.3 264 25.8
QL08p012268 Quercus lobata HOM05D000051 ORTHO05D000015 1.8e-08 64.3 276 27.5
QL08p012292 Quercus lobata HOM05D000051 ORTHO05D000015 1.8e-08 64.3 276 27.2
Thecc.07G045600 Theobroma cacao HOM05D000051 ORTHO05D000015 1.8e-08 64.3 275 26.2
Medtr1g115250 Medicago truncatula HOM05D000051 ORTHO05D000015 3.0e-08 63.5 222 27.5
Rhsim04G0000300 Rhododendron simsii HOM05D000051 ORTHO05D000015 3.0e-08 63.5 265 29.1
RcHm_v2.0_Chr5g0059951 Rosa chinensis HOM05D000051 ORTHO05D000015 3.0e-08 63.5 215 26.0
TPR.G25974 Trifolium pratense HOM05D000051 ORTHO05D000015 3.0e-08 63.5 251 28.3
TPR.G16816 Trifolium pratense HOM05D000051 ORTHO05D000015 3.9e-08 63.2 226 27.9
Glyma.13G263100 Glycine max HOM05D000051 ORTHO05D000015 5.1e-08 62.8 233 25.3
Medtr4g080590 Medicago truncatula HOM05D000051 ORTHO05D000015 8.7e-08 62.0 254 27.6
QL08p019859 Quercus lobata HOM05D000051 ORTHO05D000015 8.7e-08 62.0 251 26.3
Aqoxy4G00633 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 1.1e-07 61.6 281 27.0
arahy.Tifrunner.gnm1.ann1.L5GG2G Arachis hypogaea HOM05D000051 ORTHO05D000015 1.1e-07 61.6 234 23.9
arahy.Tifrunner.gnm1.ann1.RIMI91 Arachis hypogaea HOM05D000051 ORTHO05D000015 1.1e-07 61.6 264 22.7
Cfa006563 Carpinus fangiana HOM05D000051 ORTHO05D000015 1.1e-07 61.6 274 27.4
TWI38G2114 Tripterygium wilfordii HOM05D000051 ORTHO05D000015 1.1e-07 61.6 217 29.5
arahy.Tifrunner.gnm1.ann1.AXI81X Arachis hypogaea HOM05D000051 ORTHO05D000015 1.5e-07 61.2 264 23.1
Cfa016050 Carpinus fangiana HOM05D000051 ORTHO05D000015 1.5e-07 61.2 287 26.5
QL08p012534 Quercus lobata HOM05D000051 ORTHO05D000015 1.5e-07 61.2 273 26.7
COL.COLO4_04295 Corchorus olitorius HOM05D000051 ORTHO05D000015 1.9e-07 60.8 220 27.3
PSO170G3960 Papaver somniferum HOM05D000051 ORTHO05D000015 1.9e-07 60.8 236 27.1
PSO675G4332 Papaver somniferum HOM05D000051 ORTHO05D000015 1.9e-07 60.8 124 35.5
Lj2g0025192 Lotus japonicus HOM05D000051 ORTHO05D000015 2.5e-07 60.5 273 25.3
PSO541G5851 Papaver somniferum HOM05D000051 ORTHO05D000015 4.3e-07 59.7 277 27.4
RcHm_v2.0_Chr5g0069771 Rosa chinensis HOM05D000051 ORTHO05D000015 5.6e-07 59.3 220 27.7
RcHm_v2.0_Chr6g0248851 Rosa chinensis HOM05D000312 ORTHO05D000221 7.4e-07 58.9 224 26.8
Cfa010713 Carpinus fangiana HOM05D000051 ORTHO05D000015 9.6e-07 58.5 232 28.0
Medtr5g005690 Medicago truncatula HOM05D000051 ORTHO05D000015 1.3e-06 58.2 188 28.2
TWI23G0786 Tripterygium wilfordii HOM05D000051 ORTHO05D000015 1.3e-06 58.2 237 29.5
Cc05_g12190 Coffea canephora HOM05D000051 ORTHO05D000015 1.6e-06 57.8 129 34.9
PSO478G5245 Papaver somniferum HOM05D000051 ORTHO05D000015 1.6e-06 57.8 197 26.4
Peaxi162Scf00853g00215 Petunia axillaris HOM05D000051 ORTHO05D011342 1.6e-06 57.8 272 24.6
CARHR089650 Cardamine hirsuta HOM05D000051 ORTHO05D000015 2.1e-06 57.4 272 24.3
DCAR_022537 Daucus carota HOM05D000051 ORTHO05D000015 2.1e-06 57.4 234 24.8
Oeu040176.1 Olea europaea HOM05D000312 ORTHO05D000221 2.1e-06 57.4 227 27.3
RcHm_v2.0_Chr5g0059961 Rosa chinensis HOM05D000051 ORTHO05D000015 2.1e-06 57.4 217 25.3
arahy.Tifrunner.gnm1.ann1.AI520R Arachis hypogaea HOM05D000051 ORTHO05D000015 2.8e-06 57.0 231 25.5
arahy.Tifrunner.gnm1.ann1.T6X0Y4 Arachis hypogaea HOM05D000051 ORTHO05D000015 2.8e-06 57.0 284 25.4
Cfa006569 Carpinus fangiana HOM05D000051 ORTHO05D000015 2.8e-06 57.0 253 26.9
COL.COLO4_05307 Corchorus olitorius HOM05D000051 ORTHO05D000015 2.8e-06 57.0 218 30.3
Eucgr.E04107 Eucalyptus grandis HOM05D000051 ORTHO05D000015 2.8e-06 57.0 209 28.2
Glyma.13G262700 Glycine max HOM05D000051 ORTHO05D000015 2.8e-06 57.0 240 26.2
PSO801G0229 Papaver somniferum HOM05D000051 ORTHO05D000015 2.8e-06 57.0 235 27.7
AL3G27020 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 3.7e-06 56.6 273 24.2
Ah.13g072830 Amaranthus hybridus HOM05D000051 ORTHO05D000015 4.8e-06 56.2 178 28.1
arahy.Tifrunner.gnm1.ann1.U4L8N2 Arachis hypogaea HOM05D000051 ORTHO05D000015 4.8e-06 56.2 231 25.5
DCAR_017364 Daucus carota HOM05D000051 ORTHO05D000015 4.8e-06 56.2 279 24.0
Aqoxy1G02688 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 6.2e-06 55.8 262 26.0
FAN10G1889 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.2e-06 55.8 165 32.1
Glyma.13G262900 Glycine max HOM05D000051 ORTHO05D000015 6.2e-06 55.8 246 25.2
PSO832G0349 Papaver somniferum HOM05D000051 ORTHO05D000015 6.2e-06 55.8 274 25.2
Sc13g0005570 Simmondsia chinensis HOM05D000051 ORTHO05D000015 6.2e-06 55.8 188 26.1
Ciclev10010578m.g Citrus clementina HOM05D000051 ORTHO05D011342 8.1e-06 55.5 240 25.0
Thhalv10022020m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 8.1e-06 55.5 261 21.5
vmacro11759 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 8.1e-06 55.5 203 25.6


User provided reference genes

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