Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 2.9e-45 184.9 96 100.0
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 7.5e-41 170.2 92 94.6
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 1.5e-36 156.0 94 83.0
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.6e-35 152.5 94 80.9
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.6e-35 152.5 94 80.9
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 2.1e-35 152.1 92 79.3
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 4.7e-35 151.0 93 80.6
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 6.1e-35 150.6 93 81.7
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 8.0e-35 150.2 93 77.4
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 1.4e-34 149.4 93 79.6
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.4e-34 149.4 94 79.8
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.4e-34 149.4 94 79.8
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 1.8e-34 149.1 93 78.5
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.8e-34 149.1 93 77.4
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 2.3e-34 148.7 92 79.3
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 3.1e-34 148.3 92 77.2
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 3.1e-34 148.3 93 79.6
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 4.0e-34 147.9 93 76.3
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 5.2e-34 147.5 96 79.2
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 5.2e-34 147.5 93 79.6
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 6.8e-34 147.1 91 78.0
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 1.2e-33 146.4 94 78.7
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.5e-33 146.0 93 77.4
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 2.6e-33 145.2 93 77.4
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 4.4e-33 144.4 93 77.4
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 4.4e-33 144.4 93 77.4
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 5.8e-33 144.1 95 75.8
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 1.3e-32 142.9 96 72.9
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 1.3e-32 142.9 93 75.3
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 1.3e-32 142.9 93 76.3
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 1.7e-32 142.5 92 73.9
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 1.7e-32 142.5 93 77.4
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 2.2e-32 142.1 91 76.9
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 2.2e-32 142.1 92 73.9
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 2.2e-32 142.1 92 73.9
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 2.2e-32 142.1 93 79.6
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.9e-32 141.7 92 72.8
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.9e-32 141.7 92 72.8
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.9e-32 141.7 92 72.8
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 2.9e-32 141.7 93 75.3
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 2.9e-32 141.7 97 72.2
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 2.9e-32 141.7 92 75.0
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.9e-32 141.7 95 70.5
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.9e-32 141.7 95 70.5
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 2.9e-32 141.7 93 76.3
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 4.9e-32 141.0 94 73.4
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 4.9e-32 141.0 94 72.3
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 6.4e-32 140.6 93 76.3
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 6.4e-32 140.6 93 74.2
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 6.4e-32 140.6 91 76.9
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 8.3e-32 140.2 92 75.0
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.1e-31 139.8 95 74.7
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 1.1e-31 139.8 94 75.5
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.1e-31 139.8 94 77.7
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.1e-31 139.8 93 76.3
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 1.4e-31 139.4 95 74.7
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.4e-31 139.4 89 77.5
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 1.9e-31 139.0 94 73.4
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 1.9e-31 139.0 94 71.3
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 1.9e-31 139.0 93 69.9
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 2.4e-31 138.7 94 73.4
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 2.4e-31 138.7 94 71.3
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 2.4e-31 138.7 94 71.3
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 3.2e-31 138.3 93 75.3
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 3.2e-31 138.3 93 74.2
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 3.2e-31 138.3 94 73.4
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 5.4e-31 137.5 94 72.3
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 7.0e-31 137.1 94 73.4
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 7.0e-31 137.1 94 71.3
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 7.0e-31 137.1 94 73.4
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 7.0e-31 137.1 93 74.2
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 9.2e-31 136.7 92 73.9
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 72.0
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 71.0
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 73.1
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 73.1
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 1.2e-30 136.3 92 68.5
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 71.0
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 2.0e-30 135.6 93 75.3
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 2.0e-30 135.6 95 70.5
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 2.7e-30 135.2 94 71.3
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 2.7e-30 135.2 93 69.9
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 3.5e-30 134.8 93 72.0
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 3.5e-30 134.8 93 74.2
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 3.5e-30 134.8 93 69.9
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 4.6e-30 134.4 94 72.3
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 4.6e-30 134.4 94 72.3
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.6e-30 134.4 93 69.9
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 6.0e-30 134.0 91 72.5
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 6.0e-30 134.0 93 66.7
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 6.0e-30 134.0 94 71.3
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 6.0e-30 134.0 93 73.1
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 7.8e-30 133.7 97 68.0
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 7.8e-30 133.7 94 72.3
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 1.0e-29 133.3 94 72.3
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 1.7e-29 132.5 93 74.2
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.7e-29 132.5 93 73.1
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.7e-29 132.5 92 71.7
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 3.0e-29 131.7 96 67.7
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.0e-29 131.7 93 67.7
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.0e-29 131.7 78 75.6
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 3.9e-29 131.3 93 73.1
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 3.9e-29 131.3 93 73.1
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 5.0e-29 131.0 93 69.9
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 6.6e-29 130.6 94 69.1
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 8.6e-29 130.2 93 68.8
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 8.6e-29 130.2 93 72.0
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 1.9e-28 129.0 93 68.8
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 2.5e-28 128.6 93 65.6
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 2.5e-28 128.6 93 69.9
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 3.3e-28 128.3 94 67.0
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 4.3e-28 127.9 92 70.7
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 7.3e-28 127.1 91 69.2
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.6e-27 125.9 94 70.2
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 2.1e-27 125.6 93 67.7
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 2.1e-27 125.6 84 67.9
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 2.1e-27 125.6 93 69.9
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 2.1e-27 125.6 84 70.2
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 2.8e-27 125.2 91 65.9
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 2.8e-27 125.2 93 67.7
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 2.8e-27 125.2 93 67.7
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 8.0e-27 123.6 78 74.4
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.8e-26 122.5 93 66.7
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.8e-26 122.5 93 66.7
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 1.8e-26 122.5 91 68.1
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 2.3e-26 122.1 93 65.6
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 2.3e-26 122.1 91 64.8
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 3.1e-26 121.7 93 64.5
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 3.1e-26 121.7 91 67.0
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 4.0e-26 121.3 95 65.3
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 4.0e-26 121.3 94 64.9
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 5.2e-26 120.9 93 67.7
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 1.2e-25 119.8 93 66.7
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 1.5e-25 119.4 94 63.8
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 2.0e-25 119.0 93 64.5
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 2.0e-25 119.0 93 64.5
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 2.0e-25 119.0 91 61.5
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 2.6e-25 118.6 93 64.5
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 2.6e-25 118.6 93 64.5
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 2.2e-24 115.5 93 63.4
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 2.2e-24 115.5 93 63.4
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.2e-24 115.5 82 64.6
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 2.9e-24 115.2 82 70.7
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 4.9e-24 114.4 82 69.5
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 4.9e-24 114.4 91 62.6
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 8.3e-24 113.6 91 62.6
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 8.3e-24 113.6 95 62.1
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 2.4e-23 112.1 91 60.4
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 4.1e-23 111.3 81 66.7
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 4.1e-23 111.3 81 66.7
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 7.1e-23 110.5 84 66.7
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 7.1e-23 110.5 103 59.2
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.2e-22 109.8 93 59.1
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 4.6e-22 107.8 92 58.7
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 1.0e-21 106.7 79 67.1
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 8.6e-21 103.6 81 65.4
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 1.5e-20 102.8 91 59.3
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 3.1e-18 95.1 65 69.2
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.5e-17 92.8 92 50.0
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 2.2e-16 89.0 92 47.8
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 3.2e-15 85.1 61 63.9
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 1.2e-14 83.2 72 58.3
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 2.7e-14 82.0 58 63.8
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 7.8e-14 80.5 72 61.1
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.0e-13 80.1 52 75.0
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 8.6e-13 77.0 94 44.7
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 3.3e-12 75.1 76 46.1
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 3.3e-12 75.1 71 46.5
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 2.8e-11 72.0 73 41.1
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 6.8e-10 67.4 40 72.5
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 7.1e-07 57.4 69 40.6
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.2e-06 56.6 73 34.2
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 6.0e-06 54.3 69 39.1


User provided reference genes

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