Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 7.6e-145 517.3 293 100.0
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 2.0e-124 449.5 260 86.5
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.5e-121 439.9 255 87.8
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 5.5e-119 431.4 259 83.4
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.3e-117 426.0 261 82.0
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.1e-116 423.7 257 82.1
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.6e-116 422.5 259 82.6
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 4.4e-116 421.8 259 82.6
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 2.8e-115 419.1 256 82.4
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 4.8e-115 418.3 262 79.8
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.1e-114 417.2 258 79.8
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 4.1e-114 415.2 259 79.5
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.6e-113 413.3 252 82.1
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 2.0e-113 412.9 261 77.8
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 2.0e-113 412.9 263 79.1
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.6e-113 412.5 253 81.4
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 2.6e-113 412.5 254 80.3
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 4.5e-113 411.8 263 79.1
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 4.5e-113 411.8 255 81.2
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 7.7e-113 411.0 267 78.7
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.3e-112 410.2 265 77.4
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 1.7e-112 409.8 256 80.5
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 2.2e-112 409.5 265 79.2
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 2.2e-112 409.5 275 77.8
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.8e-112 408.7 258 80.6
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 3.8e-112 408.7 257 78.2
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 6.5e-112 407.9 269 76.2
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 8.5e-112 407.5 261 78.5
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 8.5e-112 407.5 260 78.1
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 8.5e-112 407.5 253 81.0
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.1e-111 407.1 245 81.6
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.9e-111 406.4 262 76.7
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 2.5e-111 406.0 251 78.5
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 3.2e-111 405.6 264 76.5
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 3.2e-111 405.6 254 78.3
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 5.5e-111 404.8 260 76.9
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 7.2e-111 404.4 250 78.8
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.2e-110 403.7 250 78.8
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.6e-110 403.3 262 76.0
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.6e-110 403.3 267 77.2
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.6e-110 403.3 258 75.6
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 1.6e-110 403.3 262 76.0
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 2.1e-110 402.9 255 76.5
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 2.7e-110 402.5 266 77.8
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 3.6e-110 402.1 251 78.1
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 3.6e-110 402.1 256 78.5
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 6.1e-110 401.4 251 79.3
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.0e-109 400.6 250 78.0
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 1.0e-109 400.6 262 76.7
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 1.4e-109 400.2 252 79.0
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 6.7e-109 397.9 264 75.4
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 8.8e-109 397.5 253 77.1
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-108 397.1 250 77.2
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 1.5e-108 396.7 256 78.5
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 2.0e-108 396.4 324 66.7
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 3.3e-108 395.6 258 76.7
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 4.4e-108 395.2 256 77.3
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 5.7e-108 394.8 252 76.6
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 5.7e-108 394.8 258 75.6
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 9.7e-108 394.0 256 77.0
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.7e-107 393.3 251 77.3
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.7e-107 393.3 247 77.3
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.7e-107 393.3 258 77.5
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 3.7e-107 392.1 258 74.4
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 6.3e-107 391.3 245 80.0
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.1e-106 390.6 256 73.8
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.1e-106 390.6 251 75.7
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 4.5e-105 385.2 256 76.2
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 8.5e-104 380.9 253 75.9
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.5e-103 380.2 276 72.1
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.9e-103 379.8 259 72.2
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 5.5e-103 378.3 253 73.5
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 9.4e-103 377.5 253 72.3
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 2.1e-102 376.3 248 76.2
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 3.6e-102 375.6 257 73.5
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 8.0e-102 374.4 256 73.8
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 8.0e-102 374.4 256 73.8
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 8.0e-102 374.4 250 75.2
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.0e-101 374.0 256 71.1
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 1.0e-101 374.0 256 73.4
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.0e-101 374.0 260 72.7
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.0e-101 374.0 274 69.7
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 3.0e-101 372.5 256 73.0
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 4.0e-101 372.1 247 74.1
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 8.8e-101 370.9 260 72.7
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 2.0e-100 369.8 255 72.9
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 3.4e-100 369.0 248 73.8
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 4.4e-100 368.6 255 72.9
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.3e-99 367.1 259 68.3
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 2.2e-99 366.3 258 73.3
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.4e-98 363.6 256 71.5
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.5e-95 353.6 249 70.7
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 1.7e-91 340.1 247 68.4
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 8.3e-91 337.8 247 67.6
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-89 334.0 247 66.4
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 2.0e-89 333.2 247 66.4
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 2.7e-89 332.8 253 66.4
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.3e-83 313.9 216 71.3
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 4.9e-83 312.0 201 76.6
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 2.0e-81 306.6 251 65.7
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 1.8e-77 293.5 255 58.4
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.2e-73 280.8 254 58.3
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.9e-72 275.8 255 52.9
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 9.5e-71 271.2 266 50.8
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.4e-69 267.3 261 52.1
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.1e-63 247.7 166 72.3
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 3.5e-57 226.1 231 48.5
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.3e-56 224.2 139 78.4
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.9e-56 222.6 167 67.7
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 5.3e-53 212.2 202 53.0
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 9.9e-52 208.0 188 59.0
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 2.9e-51 206.5 168 62.5
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 6.4e-51 205.3 207 57.0
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.1e-46 190.3 127 74.8
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 6.4e-43 178.7 184 56.0
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 3.2e-42 176.4 165 58.2
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 5.6e-39 165.6 112 71.4
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 9.6e-39 164.9 114 68.4
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 3.7e-38 162.9 168 55.4
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 8.4e-35 151.8 109 69.7
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.1e-34 148.7 108 65.7
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 6.0e-33 145.6 102 73.5
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 5.1e-32 142.5 89 82.0
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 7.4e-31 138.7 111 60.4
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.8e-29 134.0 109 62.4
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.5e-28 131.0 73 87.7
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.0e-27 128.3 77 71.4
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 6.1e-25 119.0 248 31.0
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 3.9e-24 116.3 80 70.0
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 3.3e-23 113.2 72 70.8
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 1.5e-20 104.4 80 60.0
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 8.5e-19 98.6 87 58.6
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.2e-18 96.3 91 57.1
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 7.2e-18 95.5 275 29.5
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 2.1e-17 94.0 56 80.4
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.4e-16 91.3 183 31.1
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.4e-16 91.3 55 80.0
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 1.4e-16 91.3 50 86.0
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 8.8e-16 88.6 96 55.2
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.7e-14 83.2 147 33.3
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.2e-12 78.2 219 28.3
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 1.5e-12 77.8 71 56.3
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 1.1e-10 71.6 144 31.2
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 7.2e-10 68.9 42 81.0
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 2.1e-09 67.4 38 76.3
SalBow1G0093 Salvia bowleyana HOM05D005205 ORTHO05D006155 2.8e-06 57.0 53 56.6


User provided reference genes

Program Settings