Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 0.0e+00 1296.6 695 100.0
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 3.0e-155 553.1 574 54.4
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.5e-154 550.8 574 53.8
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 3.3e-154 549.7 621 52.8
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 1.4e-152 544.3 660 51.4
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.4e-152 544.3 621 51.4
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.1e-146 524.6 623 50.1
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 6.2e-145 518.8 679 47.1
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 6.2e-145 518.8 612 50.2
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 8.1e-145 518.5 630 49.0
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 2.4e-144 516.9 626 49.8
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 1.2e-143 514.6 627 50.1
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 1.2e-143 514.6 670 46.9
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.2e-140 504.6 597 49.9
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 4.6e-140 502.7 658 46.7
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.3e-139 501.1 621 48.8
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 6.7e-139 498.8 584 50.0
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 1.9e-138 497.3 596 49.0
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 2.8e-137 493.4 584 49.1
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 4.8e-137 492.7 581 49.9
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 4.8e-137 492.7 669 46.9
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 9.0e-136 488.4 672 45.1
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 1.2e-135 488.0 542 50.9
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 1.5e-135 487.6 656 46.6
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 4.9e-134 482.6 618 46.6
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 8.4e-134 481.9 538 50.2
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 8.4e-134 481.9 600 47.2
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.4e-133 481.1 592 48.5
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 7.1e-133 478.8 541 51.2
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 3.5e-132 476.5 546 50.5
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 2.3e-131 473.8 649 45.0
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 5.1e-131 472.6 685 44.4
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 6.7e-131 472.2 721 42.9
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 1.9e-130 470.7 634 46.4
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 4.3e-130 469.5 605 47.4
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 5.7e-130 469.2 608 46.4
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 1.3e-129 468.0 534 50.2
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.3e-129 468.0 587 48.6
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.6e-129 467.6 661 45.5
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 2.1e-129 467.2 574 49.5
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 1.4e-128 464.5 905 37.5
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 1.8e-128 464.2 727 41.7
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 3.4e-127 459.9 640 44.8
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 3.4e-127 459.9 641 43.7
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.9e-126 456.8 591 47.0
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 3.8e-126 456.4 620 45.3
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 3.8e-126 456.4 620 45.3
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 3.8e-126 456.4 642 44.7
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 6.5e-126 455.7 638 44.2
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 6.5e-126 455.7 658 44.5
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 6.5e-126 455.7 632 44.0
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.6e-124 451.1 582 46.6
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 2.1e-124 450.7 627 46.6
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 2.7e-124 450.3 609 47.8
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 8.7e-123 445.3 735 41.2
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 2.2e-121 440.7 621 44.0
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 6.3e-121 439.1 702 41.2
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.4e-120 438.0 611 45.2
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 4.1e-120 436.4 611 45.0
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 4.1e-120 436.4 650 41.1
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.3e-120 436.0 609 46.0
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.2e-119 434.9 600 43.7
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 5.9e-119 432.6 559 45.6
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 1.0e-118 431.8 563 46.2
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 2.9e-118 430.3 650 42.2
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 5.0e-118 429.5 677 41.5
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 6.5e-118 429.1 606 44.4
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 1.1e-117 428.3 737 40.2
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 5.5e-117 426.0 674 42.0
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.2e-116 424.9 609 45.2
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 4.6e-116 422.9 643 43.9
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 1.8e-115 421.0 544 46.5
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 3.9e-115 419.9 665 41.4
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 2.5e-114 417.2 637 43.0
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.7e-113 413.3 604 42.7
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 6.3e-113 412.5 584 43.3
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.1e-112 410.2 588 43.5
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 4.1e-112 409.8 674 40.5
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.5e-111 407.9 559 45.3
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 2.6e-111 407.1 546 45.6
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 3.4e-111 406.8 730 38.1
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.1e-109 401.7 464 51.7
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 9.4e-109 398.7 465 49.7
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.2e-108 398.3 611 41.6
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 2.1e-108 397.5 753 37.2
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 2.7e-108 397.1 634 40.9
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 7.9e-108 395.6 590 43.6
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-107 394.8 717 37.8
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 6.7e-107 392.5 635 40.8
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 1.5e-106 391.3 543 44.0
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 3.3e-106 390.2 641 40.6
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 3.7e-105 386.7 669 38.9
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 2.0e-103 380.9 464 49.1
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.1e-101 375.2 689 38.6
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 9.4e-101 372.1 719 36.7
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 1.2e-100 371.7 657 38.5
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 2.1e-100 370.9 456 49.1
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.4e-99 368.2 659 39.0
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 1.7e-89 334.7 567 39.3
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.3e-83 314.3 261 63.6
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.6e-74 284.3 194 71.6
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.2e-71 275.4 241 61.8
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 8.6e-70 269.2 252 58.7
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 1.5e-69 268.5 670 30.7
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 5.6e-69 266.5 579 33.2
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 9.5e-69 265.8 538 36.4
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.7e-68 263.5 538 36.2
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.2e-63 248.8 600 31.8
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 1.6e-63 248.4 205 62.0
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 8.1e-60 236.1 178 66.3
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.0e-59 233.8 537 33.1
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 1.2e-55 222.2 199 57.8
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 1.2e-55 222.2 219 53.9
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.1e-47 194.9 176 56.8
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.0e-46 192.6 150 66.7
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 1.5e-42 178.7 242 45.5
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 2.7e-39 167.9 194 51.5
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.6e-36 158.7 194 44.3
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-30 139.4 171 47.4
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 8.1e-28 129.8 218 38.1
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 9.0e-27 126.3 104 63.5
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 9.0e-27 126.3 195 39.5
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-24 119.0 169 43.2
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 7.9e-23 113.2 355 28.2
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 5.6e-21 107.1 187 38.0
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 5.6e-21 107.1 187 38.0
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 3.7e-20 104.4 141 41.1
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 6.2e-20 103.6 80 65.0
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 3.8e-17 94.4 134 45.5
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.0e-14 86.3 59 67.8
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 1.8e-14 85.5 127 39.4
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 1.3e-12 79.3 104 41.3
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 1.8e-11 75.5 48 79.2
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 3.4e-10 71.2 49 67.3
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 5.9e-10 70.5 125 40.0
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 7.6e-10 70.1 124 37.9
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 1.7e-09 68.9 132 34.8
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.7e-09 68.9 61 55.7
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 3.8e-09 67.8 158 33.5
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 3.8e-09 67.8 116 39.7
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.1e-08 66.2 167 30.5
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.1e-08 66.2 167 30.5
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 1.4e-08 65.9 154 30.5
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 1.4e-08 65.9 154 30.5
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 2.5e-08 65.1 122 33.6
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 2.5e-08 65.1 115 36.5
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 3.2e-08 64.7 186 28.5
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 3.2e-08 64.7 122 35.2
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 4.2e-08 64.3 122 34.4
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 4.2e-08 64.3 122 34.4
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 4.2e-08 64.3 122 34.4
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 1.2e-07 62.8 122 32.8
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.2e-07 62.8 122 34.4
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.2e-07 62.8 122 33.6
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 1.6e-07 62.4 120 31.7
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.6e-07 62.4 122 33.6
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 2.1e-07 62.0 122 36.1
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.1e-07 62.0 122 32.8
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 2.1e-07 62.0 57 61.4
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 2.1e-07 62.0 260 26.9
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.7e-07 61.6 166 33.1
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 2.7e-07 61.6 134 34.3
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 2.7e-07 61.6 259 26.6
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 3.6e-07 61.2 124 36.3
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 3.6e-07 61.2 122 33.6
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 3.6e-07 61.2 135 34.8
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 3.6e-07 61.2 157 29.9
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 6.1e-07 60.5 160 30.0
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 7.9e-07 60.1 123 36.6
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 7.9e-07 60.1 127 34.6
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 1.0e-06 59.7 181 30.4
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 1.0e-06 59.7 76 44.7
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 1.0e-06 59.7 128 35.2
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 1.3e-06 59.3 122 35.2
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.8e-06 58.9 120 35.8
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 3.0e-06 58.2 122 28.7
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 3.0e-06 58.2 157 29.3
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 3.0e-06 58.2 166 29.5
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 5.1e-06 57.4 130 29.2
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 6.7e-06 57.0 123 34.1
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 6.7e-06 57.0 244 26.2
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 8.7e-06 56.6 239 25.5


User provided reference genes

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