Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g13640 Coffea canephora HOM05D004195 ORTHO05D005309 0.0e+00 1254.6 620 100.0
Peaxi162Scf00946g00016 Petunia axillaris HOM05D004195 ORTHO05D005309 4.5e-304 1047.3 601 82.7
Peaxi162Scf00066g00527 Petunia axillaris HOM05D004195 ORTHO05D005309 1.3e-303 1045.8 619 80.8
Sopen04g025940 Solanum pennellii HOM05D004195 ORTHO05D005309 1.1e-302 1042.7 621 80.4
Solyc04g058070.3 Solanum lycopersicum HOM05D004195 ORTHO05D005309 2.1e-301 1038.5 611 80.9
PGSC0003DMG400023024 Solanum tuberosum HOM05D004195 ORTHO05D005309 2.0e-299 1031.9 623 79.5
Lj7C351T8 Lonicera japonica HOM05D004195 ORTHO05D005309 3.3e-299 1031.2 618 80.3
MSTRG.25350 Avicennia marina HOM05D004195 ORTHO05D005309 1.7e-298 1028.9 620 79.5
CAN.G405.5 Capsicum annuum HOM05D004195 ORTHO05D005309 3.7e-298 1027.7 622 78.9
TAR381G1357 Trochodendron aralioides HOM05D004195 ORTHO05D005309 3.7e-298 1027.7 619 79.8
Manes.18G083251 Manihot esculenta HOM05D004195 ORTHO05D005309 1.8e-297 1025.4 618 79.6
TAR625G0293 Trochodendron aralioides HOM05D004195 ORTHO05D005309 1.8e-297 1025.4 616 79.1
SalBow7G3728 Salvia bowleyana HOM05D004195 ORTHO05D005309 4.1e-297 1024.2 617 79.6
Thecc.08G133900 Theobroma cacao HOM05D004195 ORTHO05D005309 9.1e-297 1023.1 620 77.9
Ciclev10000592m.g Citrus clementina HOM05D004195 ORTHO05D005309 1.2e-296 1022.7 622 79.3
Migut.C01079 Erythranthe guttata HOM05D004195 ORTHO05D005309 2.6e-296 1021.5 616 79.7
Nitab4.5_0000317g0080 Nicotiana tabacum HOM05D004195 ORTHO05D005309 3.4e-296 1021.1 597 82.1
Cfa018421 Carpinus fangiana HOM05D004195 ORTHO05D005309 1.0e-295 1019.6 621 78.7
Potri.002G077400 Populus trichocarpa HOM05D004195 ORTHO05D005309 2.2e-295 1018.5 618 79.3
Atru.chr13.1591 Acer truncatum HOM05D004195 ORTHO05D005309 4.2e-294 1014.2 620 78.9
Gohir.A08G221616 Gossypium hirsutum HOM05D004195 ORTHO05D005309 4.2e-294 1014.2 619 77.2
Sabra02G0060800 Salix brachista HOM05D004195 ORTHO05D005309 1.2e-293 1012.7 618 79.4
SGA_v2.0_scaffold7G03728 Striga asiatica HOM05D004195 ORTHO05D005309 1.6e-293 1012.3 617 79.3
MSTRG.1402 Avicennia marina HOM05D004195 ORTHO05D005309 6.1e-293 1010.4 619 79.5
TWI60G0549 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 3.0e-292 1008.1 615 78.4
Gorai.004G254500 Gossypium raimondii HOM05D004195 ORTHO05D005309 3.9e-292 1007.7 614 77.7
CiPaw.15G030800 Carya illinoinensis HOM05D004195 ORTHO05D005309 9.7e-291 1003.0 621 77.5
TWI34G0939 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 1.7e-290 1002.3 618 78.2
Actinidia21272 Actinidia chinensis HOM05D004195 ORTHO05D005309 3.7e-290 1001.1 621 77.9
unitig_748.g7692 Utricularia gibba HOM05D004195 ORTHO05D005309 1.4e-289 999.2 621 77.5
Oeu045951.3 Olea europaea HOM05D004195 ORTHO05D005309 3.1e-289 998.0 635 76.5
Actinidia15207 Actinidia chinensis HOM05D004195 ORTHO05D005309 7.0e-289 996.9 621 77.5
CSS0005980 Camellia sinensis var. sinensis HOM05D004195 ORTHO05D005309 7.0e-289 996.9 621 76.8
PSO729G0087 Papaver somniferum HOM05D004195 ORTHO05D005309 7.0e-289 996.9 613 78.0
Gohir.D03G063000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 9.1e-289 996.5 616 77.1
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 9.1e-289 996.5 615 77.2
FAN20G1489 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.2e-288 996.1 610 78.5
Gorai.013G108400 Gossypium raimondii HOM05D004195 ORTHO05D005309 2.6e-288 995.0 616 77.3
Nn5g28450 Nelumbo nucifera HOM05D004195 ORTHO05D005309 2.6e-288 995.0 575 82.3
CiPaw.16G022400 Carya illinoinensis HOM05D004195 ORTHO05D005309 5.9e-288 993.8 621 76.2
Nitab4.5_0002557g0050 Nicotiana tabacum HOM05D004195 ORTHO05D005309 5.9e-288 993.8 621 77.6
HanXRQChr02g0055521 Helianthus annuus HOM05D004195 ORTHO05D005309 1.3e-287 992.6 598 78.8
MELO3C008467.2 Cucumis melo HOM05D004195 ORTHO05D005309 6.5e-287 990.3 609 78.7
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 2.5e-286 988.4 601 78.4
PGR042G0897 Punica granatum HOM05D004195 ORTHO05D005309 2.5e-286 988.4 622 75.6
HanXRQChr14g0452241 Helianthus annuus HOM05D004195 ORTHO05D005309 3.2e-286 988.0 621 76.0
RcHm_v2.0_Chr6g0296821 Rosa chinensis HOM05D004195 ORTHO05D005309 9.4e-286 986.5 589 79.3
CsaV3_6G034020 Cucumis sativus L. HOM05D004195 ORTHO05D005309 2.1e-285 985.3 605 78.8
AUR62007701 Chenopodium quinoa HOM05D004195 ORTHO05D005309 8.0e-285 983.4 619 75.6
DCAR_003592 Daucus carota HOM05D004195 ORTHO05D005309 1.0e-284 983.0 636 75.6
Rhsim11G0072300 Rhododendron simsii HOM05D004195 ORTHO05D005309 1.8e-284 982.2 666 72.7
THA.LOC104808371 Tarenaya hassleriana HOM05D004195 ORTHO05D000001 1.8e-284 982.2 603 79.1
Sed0021205 Sechium edule HOM05D004195 ORTHO05D005309 3.0e-284 981.5 609 77.0
GSVIVG01008799001 Vitis vinifera HOM05D004195 ORTHO05D005309 6.7e-284 980.3 638 74.9
Prupe.1G488700 Prunus persica HOM05D004195 ORTHO05D005309 1.5e-283 979.2 607 77.8
Aa31LG9G14170 Aethionema arabicum HOM05D004195 ORTHO05D005309 2.6e-283 978.4 615 76.4
PSO541G1755 Papaver somniferum HOM05D004195 ORTHO05D005309 2.6e-283 978.4 611 76.8
Lsat_1_v5_gn_2_99200 Lactuca sativa HOM05D004195 ORTHO05D005309 3.3e-283 978.0 602 77.6
ECA233G3807 Erigeron canadensis HOM05D004195 ORTHO05D005309 2.8e-282 974.9 599 76.8
Hund17352 Selenicereus undatus HOM05D004195 ORTHO05D005309 2.8e-282 974.9 638 74.8
FAN27G3503 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.4e-281 972.6 648 73.8
MD15G1133100 Malus domestica HOM05D004195 ORTHO05D005309 4.1e-281 971.1 606 77.4
Dinv14704 Davidia involucrata HOM05D004195 ORTHO05D005309 7.0e-281 970.3 627 77.2
ECA238G0374 Erigeron canadensis HOM05D004195 ORTHO05D005309 3.5e-280 968.0 619 74.6
FAN24G0605 Fragaria x ananassa HOM05D004195 ORTHO05D005309 7.7e-280 966.8 642 73.8
CARHR265560 Cardamine hirsuta HOM05D004195 ORTHO05D005309 1.7e-279 965.7 608 76.3
FAN15G2696 Fragaria x ananassa HOM05D004195 ORTHO05D005309 5.0e-279 964.1 648 73.5
ClCG08G006050 Citrullus lanatus HOM05D004195 ORTHO05D005309 6.5e-279 963.8 610 77.2
EL10Ac1g01366 Beta vulgaris HOM05D004195 ORTHO05D005309 1.5e-278 962.6 619 75.0
Eucgr.F03856 Eucalyptus grandis HOM05D004195 ORTHO05D005309 1.6e-277 959.1 629 73.4
Carub.0008s1270 Capsella rubella HOM05D004195 ORTHO05D005309 6.1e-277 957.2 598 76.4
VMungo1309G1545 Vigna mungo HOM05D004195 ORTHO05D005309 1.0e-276 956.4 599 76.0
Sp4g04790 Schrenkiella parvula HOM05D004195 ORTHO05D005309 1.8e-276 955.7 598 76.6
Lalb_Chr23g0271201 Lupinus albus HOM05D004195 ORTHO05D005309 2.3e-276 955.3 600 76.2
AT5G52560 Arabidopsis thaliana HOM05D004195 ORTHO05D005309 3.0e-276 954.9 598 76.6
AL8G27030 Arabidopsis lyrata HOM05D004195 ORTHO05D005309 4.0e-276 954.5 598 76.3
CANSAT25G3797 Cannabis sativa HOM05D004195 ORTHO05D005309 6.8e-276 953.7 629 73.1
BcaB08g35185 Brassica carinata HOM05D004195 ORTHO05D005309 1.2e-275 953.0 598 76.3
Psat5g084360 Pisum sativum HOM05D004195 ORTHO05D005309 1.2e-275 953.0 599 76.1
Phvul.009G130500 Phaseolus vulgaris HOM05D004195 ORTHO05D005309 2.6e-275 951.8 599 75.8
Glyma.04G245100 Glycine max HOM05D004195 ORTHO05D005309 3.4e-275 951.4 608 75.3
Medtr3g088650 Medicago truncatula HOM05D004195 ORTHO05D005309 4.4e-275 951.0 599 75.3
A09p55650 Brassica napus HOM05D004195 ORTHO05D005309 2.2e-274 948.7 598 76.1
C08p38640 Brassica napus HOM05D004195 ORTHO05D005309 2.8e-274 948.3 598 76.3
BraA09t40966Z Brassica rapa HOM05D004195 ORTHO05D005309 2.8e-274 948.3 598 76.1
Os06g0701200 Oryza sativa ssp. japonica HOM05D004195 ORTHO05D005309 6.3e-274 947.2 608 74.0
Zm00001eb226930 Zea mays HOM05D004195 ORTHO05D005309 6.3e-274 947.2 597 75.0
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 1.4e-273 946.0 595 76.0
BcaC07g40866 Brassica carinata HOM05D004195 ORTHO05D005309 1.8e-273 945.7 598 75.9
BolC8t51435H Brassica oleracea HOM05D004195 ORTHO05D005309 1.8e-273 945.7 598 75.9
TPR.G6326 Trifolium pratense HOM05D004195 ORTHO05D005309 3.1e-273 944.9 599 74.6
vmacro00869 Vaccinium macrocarpon HOM05D004195 ORTHO05D005309 1.6e-272 942.6 621 74.6
ATR1001G002 Amborella trichopoda HOM05D004195 ORTHO05D005309 2.1e-269 932.2 618 72.2
FvH4_2g28000 Fragaria vesca HOM05D004195 ORTHO05D005309 2.3e-268 928.7 566 78.6
Gohir.A05G238300 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.3e-268 928.7 621 72.1
SGA_v2.0_scaffold52G18908 Striga asiatica HOM05D004195 ORTHO05D005309 5.2e-268 927.5 564 79.4
HPP92_005775 Vanilla planifolia HOM05D004195 ORTHO05D005309 5.9e-264 914.1 616 72.6
Thhalv10000457m.g Eutrema salsugineum HOM05D004195 ORTHO05D005309 9.5e-262 906.7 594 74.2
Sc26g0002830 Simmondsia chinensis HOM05D004195 ORTHO05D005309 1.2e-261 906.4 564 76.2
Gohir.A10G100400 Gossypium hirsutum HOM05D004195 ORTHO05D005309 6.1e-261 904.0 563 76.7
SEGI_41147 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 9.8e-259 896.7 595 71.8
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 1.3e-258 896.3 577 75.2
HPP92_009336 Vanilla planifolia HOM05D004195 ORTHO05D005309 2.2e-258 895.6 617 70.5
Haze_17642 Corylus avellana HOM05D004195 ORTHO05D005309 3.2e-257 891.7 633 70.5
CDE07G0325 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 9.2e-257 890.2 587 72.1
PSO675G4690 Papaver somniferum HOM05D004195 ORTHO05D005309 8.6e-255 883.6 579 73.7
Ca_16614_v3 Cicer arietinum L. HOM05D004195 ORTHO05D005309 1.6e-253 879.4 547 76.8
arahy.Tifrunner.gnm1.ann1.8W34DS Arachis hypogaea HOM05D004195 ORTHO05D005309 6.8e-252 874.0 545 76.1
arahy.Tifrunner.gnm1.ann1.MX6LT2 Arachis hypogaea HOM05D004195 ORTHO05D005309 4.9e-250 867.8 552 75.2
arahy.Tifrunner.gnm1.ann1.TVXF2I Arachis hypogaea HOM05D004195 ORTHO05D005309 4.9e-250 867.8 552 75.2
Cpa.g.sc64.151 Carica papaya HOM05D004195 ORTHO05D005309 9.2e-249 863.6 515 79.6
HPP92_005816 Vanilla planifolia HOM05D004195 ORTHO05D005309 2.3e-244 849.0 614 68.6
Lj4C664G15 Lonicera japonica HOM05D004195 ORTHO05D005309 4.1e-241 838.2 581 73.0
Hma1.2p1_0880F.1_g231850 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 5.4e-241 837.8 484 83.1
Ah.04g163390 Amaranthus hybridus HOM05D004195 ORTHO05D005309 1.1e-238 830.1 514 76.8
BcaB08g36106 Brassica carinata HOM05D004195 ORTHO05D005309 6.2e-237 824.3 602 69.3
SHI09238 Sapria himalayana HOM05D004195 ORTHO05D005309 7.3e-230 800.8 613 65.3
SMO144G0039 Selaginella moellendorffii HOM05D004195 ORTHO05D005309 2.6e-227 792.3 585 65.3
Mapoly0020s0171 Marchantia polymorpha HOM05D004195 ORTHO05D005309 7.6e-227 790.8 597 64.5
Pp3c14_26160 Physcomitrium patens HOM05D004195 ORTHO05D005309 7.1e-225 784.3 596 62.9
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 7.8e-224 780.8 979 45.7
Lj4A674G55 Lonicera japonica HOM05D004195 ORTHO05D005309 4.0e-220 768.5 588 67.0
Glyma.06G118100 Glycine max HOM05D004195 ORTHO05D005309 1.4e-217 760.0 465 77.8
AUR62013440 Chenopodium quinoa HOM05D004195 ORTHO05D005309 1.1e-204 717.2 437 77.1
CBR_g38016 Chara braunii HOM05D004195 ORTHO05D005309 1.2e-203 713.8 609 60.6
Gohir.A02G111000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.4e-201 706.8 422 78.9
MCO16G082 Micromonas commoda HOM05D004195 ORTHO05D005309 7.2e-177 624.8 602 53.5
Cre14.g621751 Chlamydomonas reinhardtii HOM05D004195 ORTHO05D005309 4.7e-176 622.1 605 54.4
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 2.1e-168 596.7 512 60.0
AagrBONN_evm.TU.Sc2ySwM_228.475 Anthoceros agrestis HOM05D004195 ORTHO05D005309 1.7e-165 587.0 414 68.8
Dinv27262 Davidia involucrata HOM05D004195 ORTHO05D005309 4.8e-157 558.9 336 78.9
SEGI_17681 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 6.3e-157 558.5 358 74.3
Gorai.005G087200 Gossypium raimondii HOM05D004195 ORTHO05D005309 2.5e-153 546.6 524 56.3
PRCOL_00000078 Prasinoderma coloniale HOM05D004195 ORTHO05D005309 2.5e-153 546.6 613 49.1
Zm00001eb272890 Zea mays HOM05D004195 ORTHO05D005309 3.6e-152 542.7 339 75.5
Manes.02G169300 Manihot esculenta HOM05D004195 ORTHO05D005309 3.7e-141 506.1 355 69.9
Pp3c7_22840 Physcomitrium patens HOM05D004195 ORTHO05D005309 6.2e-120 435.6 543 44.6
CDE06G0343 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 1.2e-112 411.4 269 71.4
Sed0024885 Sechium edule HOM05D004195 ORTHO05D005309 1.8e-111 407.5 273 71.4
CDE06G1518 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 4.0e-111 406.4 283 68.2
Gohir.D02G077650 Gossypium hirsutum HOM05D004195 ORTHO05D005309 3.9e-106 389.8 423 52.5
HPP92_005823 Vanilla planifolia HOM05D004195 ORTHO05D005309 4.8e-104 382.9 271 69.0
Zm00001eb215830 Zea mays HOM05D004195 ORTHO05D005309 1.3e-98 364.8 224 75.9
Dinv27263 Davidia involucrata HOM05D004195 ORTHO05D005309 9.6e-81 305.4 195 77.4
Duzib116G0462 Durio zibethinus HOM05D004195 ORTHO05D005309 7.2e-76 289.3 402 43.8
Sopen04g025970 Solanum pennellii HOM05D004195 ORTHO05D005309 7.9e-75 285.8 186 75.8
AUR62013439 Chenopodium quinoa HOM05D004195 ORTHO05D005309 3.4e-70 270.4 186 71.5
Zm00001eb237030 Zea mays HOM05D004195 ORTHO05D005309 2.5e-68 264.2 151 81.5
Sed0012376 Sechium edule HOM05D004195 ORTHO05D005309 1.6e-46 191.8 155 65.2
Lsat_1_v5_gn_6_43121 Lactuca sativa HOM05D004195 ORTHO05D005309 1.3e-45 188.7 260 45.0
HPP92_009371 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.7e-45 188.3 126 69.0
Lsat_1_v5_gn_6_45121 Lactuca sativa HOM05D004195 ORTHO05D035846 2.2e-45 188.0 252 44.0
Lsat_1_v5_gn_6_43041 Lactuca sativa HOM05D004195 ORTHO05D035846 1.1e-36 159.1 404 30.2
Gohir.D08G239084 Gossypium hirsutum HOM05D004195 ORTHO05D005309 6.1e-35 153.3 106 67.9
Cpa.g.c44850 Carica papaya HOM05D004195 ORTHO05D005309 4.0e-34 150.6 102 71.6
Ah.04g163400 Amaranthus hybridus HOM05D004195 ORTHO05D005309 1.4e-31 142.1 103 68.9
FAN15G2766 Fragaria x ananassa HOM05D004195 ORTHO05D005309 2.0e-30 138.3 108 58.3
Hund26746 Selenicereus undatus HOM05D004195 ORTHO05D005309 9.5e-28 129.4 104 61.5
Duzib213G0704 Durio zibethinus HOM05D004195 ORTHO05D005309 6.4e-24 116.7 78 66.7
QL10p065861 Quercus lobata HOM05D001716 ORTHO05D004234 2.7e-22 111.3 56 91.1
VMungo0720G0521 Vigna mungo HOM05D000196 ORTHO05D000279 3.5e-22 110.9 84 56.0
vmacro11216 Vaccinium macrocarpon HOM05D004195 ORTHO05D050721 3.3e-20 104.4 76 65.8
Hund26745 Selenicereus undatus HOM05D004195 ORTHO05D005309 1.2e-17 95.9 71 67.6
Atru.ctg1436.5 Acer truncatum HOM05D003927 ORTHO05D004905 2.9e-16 91.3 340 27.1
Hma1.2p1_0349F.1_g132280 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 2.9e-16 91.3 69 58.0
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 3.2e-15 87.8 50 78.0
SMO351G0243 Selaginella moellendorffii HOM05D003927 ORTHO05D004905 3.2e-15 87.8 234 29.1
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 1.2e-14 85.9 423 24.3
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 2.3e-13 81.6 230 22.6
Haze_26176 Corylus avellana HOM05D003927 ORTHO05D004905 3.3e-12 77.8 292 25.0
FAN26G1170 Fragaria x ananassa HOM05D004195 ORTHO05D035846 2.8e-11 74.7 37 89.2
MBI11_g47560_MAGBIO Magnolia biondii HOM05D002408 ORTHO05D002534 3.1e-10 71.2 45 73.3
Gohir.D07G155733 Gossypium hirsutum HOM05D004195 ORTHO05D217344 4.0e-10 70.9 42 76.2
RcHm_v2.0_Chr3g0470721 Rosa chinensis HOM05D004195 ORTHO05D050721 8.9e-10 69.7 38 86.8
QL05p063882 Quercus lobata HOM05D001716 ORTHO05D004234 5.8e-09 67.0 35 85.7
Hma1.2p1_2689F.1_g326990 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 7.5e-09 66.6 58 48.3
Lsat_1_v5_gn_9_125000 Lactuca sativa HOM05D004195 ORTHO05D005309 2.9e-08 64.7 73 46.6
Lsat_1_v5_gn_3_55481 Lactuca sativa HOM05D002352 ORTHO05D011576 4.9e-08 63.9 32 84.4
HPP92_005821 Vanilla planifolia HOM05D004195 ORTHO05D429708 4.9e-08 63.9 107 39.3
MBI15_g02237_MAGBIO Magnolia biondii HOM05D000738 ORTHO05D011926 3.2e-07 61.2 41 70.7
Lsat_1_v5_gn_7_13280 Lactuca sativa HOM05D002352 ORTHO05D000385 7.1e-07 60.1 32 78.1


User provided reference genes

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