Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 0.0e+00 1470.7 730 100.0
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 4.3e-205 718.8 726 55.0
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 7.1e-200 701.4 727 52.8
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 1.2e-199 700.7 734 51.5
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 4.6e-199 698.7 734 51.6
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 1.8e-198 696.8 731 52.5
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 3.0e-198 696.0 726 51.8
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 7.4e-197 691.4 733 52.8
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 7.4e-197 691.4 735 49.5
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 8.4e-193 677.9 732 51.6
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 3.5e-191 672.5 750 49.2
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 6.0e-191 671.8 745 51.3
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 7.9e-191 671.4 736 49.7
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 6.2e-188 661.8 729 51.6
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 1.4e-187 660.6 731 50.9
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 4.0e-187 659.1 728 50.3
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 1.5e-186 657.1 731 50.8
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 7.1e-184 648.3 730 49.6
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.2e-183 647.5 730 49.0
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 3.5e-183 646.0 745 49.5
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 7.9e-183 644.8 743 47.9
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 7.9e-183 644.8 745 49.1
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.8e-182 643.7 729 49.8
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 3.0e-182 642.9 726 50.4
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 1.5e-181 640.6 737 49.1
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 1.9e-181 640.2 720 49.7
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 2.5e-181 639.8 693 51.4
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 8.2e-180 634.8 728 49.2
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 6.9e-179 631.7 725 49.2
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 1.0e-177 627.9 733 48.2
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 3.8e-177 625.9 728 48.8
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 5.0e-177 625.5 723 49.8
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 6.5e-177 625.2 723 49.7
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 2.5e-176 623.2 724 49.9
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 4.2e-176 622.5 734 47.3
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 9.4e-176 621.3 663 51.0
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.6e-175 620.5 673 50.5
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 2.7e-175 619.8 736 47.8
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 1.4e-174 617.5 801 45.7
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 3.3e-173 612.8 750 47.1
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 3.3e-173 612.8 743 49.1
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 8.2e-172 608.2 767 46.8
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 4.1e-171 605.9 738 48.0
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 5.9e-170 602.1 734 46.2
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 7.7e-170 601.7 761 46.1
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 1.3e-169 600.9 732 46.2
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 3.8e-169 599.4 741 46.0
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 3.2e-168 596.3 728 45.9
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 1.2e-167 594.3 734 46.3
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 3.0e-166 589.7 727 45.8
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 1.7e-164 583.9 738 45.0
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 1.7e-164 583.9 732 46.4
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 2.8e-164 583.2 724 48.3
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 1.4e-163 580.9 778 44.6
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 7.0e-163 578.6 723 45.8
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 9.1e-163 578.2 730 46.3
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 2.6e-162 576.6 737 42.7
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 1.9e-160 570.5 772 44.6
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 3.2e-160 569.7 804 43.9
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 9.4e-160 568.2 728 44.2
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 1.2e-159 567.8 723 45.0
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 4.7e-159 565.8 727 44.8
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 1.0e-158 564.7 735 43.7
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 3.0e-158 563.1 720 44.7
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 1.5e-157 560.8 767 43.0
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 4.8e-156 555.8 653 46.9
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 6.3e-156 555.4 786 42.5
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.6e-154 550.8 714 43.0
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 3.6e-151 539.7 699 44.6
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 4.4e-149 532.7 739 40.9
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.3e-148 531.2 677 46.7
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 1.4e-147 527.7 705 42.7
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 3.1e-147 526.6 705 42.7
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 3.5e-146 523.1 704 43.8
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 1.2e-143 514.6 598 47.3
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 6.1e-143 512.3 717 42.8
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 1.3e-140 504.6 726 41.6
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 5.4e-139 499.2 732 39.3
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 2.3e-129 467.2 745 37.9
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 1.9e-128 464.2 690 41.2
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.6e-125 453.8 542 48.5
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 7.0e-123 445.7 726 38.2
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 1.1e-120 438.3 574 46.5
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 2.6e-117 427.2 576 43.1
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.4e-107 394.8 442 51.4
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 7.1e-107 392.5 538 43.9
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 1.6e-106 391.3 531 41.1
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 1.3e-105 388.3 522 44.1
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 3.0e-105 387.1 438 49.3
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.5e-96 358.2 588 38.4
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 9.6e-96 355.5 350 52.0
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 2.4e-94 350.9 332 55.4
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 1.5e-93 348.2 435 46.0
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 2.3e-89 334.3 348 52.3
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 1.5e-88 331.6 421 45.4
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 2.8e-87 327.4 705 32.5
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.1e-86 325.5 335 54.0
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 9.0e-86 322.4 359 49.3
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 4.5e-85 320.1 338 50.9
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 2.4e-78 297.7 366 45.9
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 4.0e-78 297.0 790 30.0
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 9.0e-78 295.8 273 57.9
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 5.1e-73 280.0 698 28.9
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 2.5e-72 277.7 963 26.1
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 2.5e-72 277.7 300 47.0
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 1.2e-69 268.9 502 36.1
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 8.2e-63 246.1 234 56.4
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 6.9e-62 243.0 198 62.6
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 1.5e-56 225.3 162 70.4
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 9.1e-54 216.1 242 49.6
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 4.5e-53 213.8 899 23.9
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 9.4e-51 206.1 162 64.8
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 7.9e-50 203.0 163 62.6
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 1.8e-49 201.8 277 43.7
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 2.0e-48 198.4 276 42.0
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.5e-45 188.7 270 41.1
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 2.2e-44 184.9 319 38.9
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 8.0e-42 176.4 139 66.2
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 5.7e-40 170.2 242 43.8
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 7.7e-29 133.3 175 40.6
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 3.1e-22 111.3 140 46.4
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 7.0e-22 110.2 98 59.2
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 6.6e-20 103.6 164 37.2
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 1.0e-09 69.7 171 29.2
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 1.4e-09 69.3 125 35.2
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 3.7e-07 61.2 180 29.4
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 6.4e-07 60.5 61 54.1
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 1.1e-06 59.7 300 26.3
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 3.2e-06 58.2 35 74.3
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 4.1e-06 57.8 124 30.6


User provided reference genes

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