Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g07350 Coffea canephora HOM05D003747 ORTHO05D005080 0.0e+00 1492.2 857 100.0
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 1.3e-216 757.3 812 61.3
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 8.3e-216 754.6 805 61.1
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 1.1e-215 754.2 805 63.1
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 1.6e-214 750.4 807 60.6
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 2.7e-214 749.6 806 60.5
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 4.4e-209 732.3 798 58.1
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 1.7e-208 730.3 806 59.7
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 2.2e-208 729.9 804 61.3
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 1.9e-207 726.9 804 61.2
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 9.2e-207 724.5 804 61.1
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 1.2e-206 724.2 805 59.3
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 7.8e-206 721.5 805 57.3
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 1.0e-205 721.1 805 57.3
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 5.1e-205 718.8 804 60.6
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 1.1e-204 717.6 812 59.9
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 1.5e-204 717.2 809 59.7
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 1.5e-204 717.2 806 60.8
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 1.9e-204 716.8 805 60.1
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 6.2e-203 711.8 809 59.7
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 1.4e-202 710.7 807 60.2
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 1.8e-202 710.3 809 59.6
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 2.3e-202 709.9 808 56.9
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 3.1e-202 709.5 810 58.6
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 5.2e-202 708.8 809 59.2
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 5.2e-202 708.8 807 60.1
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 5.2e-202 708.8 805 59.3
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 6.8e-202 708.4 805 60.1
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 6.8e-202 708.4 809 59.2
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 1.5e-201 707.2 813 59.5
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 2.6e-201 706.4 809 58.7
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 3.4e-201 706.1 809 59.7
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 4.4e-201 705.7 809 59.2
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 9.9e-201 704.5 809 58.5
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 9.9e-201 704.5 810 59.4
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 1.3e-200 704.1 814 58.7
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 1.3e-200 704.1 818 57.9
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 1.7e-200 703.7 805 59.1
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.9e-200 703.0 810 58.5
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 4.9e-200 702.2 815 58.3
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 8.3e-200 701.4 813 58.8
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 8.3e-200 701.4 824 57.9
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 8.3e-200 701.4 811 58.6
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 1.4e-199 700.7 811 58.6
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 2.4e-199 699.9 813 59.0
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 4.1e-199 699.1 809 58.1
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 4.1e-199 699.1 810 59.1
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 5.4e-199 698.7 812 59.2
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 5.4e-199 698.7 813 58.5
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 7.1e-199 698.4 810 58.0
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 7.1e-199 698.4 815 58.5
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 9.2e-199 698.0 808 60.0
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.2e-198 697.6 778 57.5
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.2e-198 697.6 812 58.5
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 1.6e-198 697.2 810 56.8
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 2.1e-198 696.8 810 59.1
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 2.1e-198 696.8 812 58.4
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 7.8e-198 694.9 809 58.6
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 1.3e-197 694.1 816 57.5
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 1.3e-197 694.1 809 58.5
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 3.0e-197 693.0 805 53.3
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 6.6e-197 691.8 817 56.2
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 8.6e-197 691.4 805 58.1
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 1.1e-196 691.0 815 58.4
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 1.5e-196 690.6 808 58.8
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 1.9e-196 690.3 805 58.1
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 4.3e-196 689.1 809 57.6
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 9.6e-196 688.0 818 57.5
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 1.2e-195 687.6 814 58.2
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 1.2e-195 687.6 859 56.2
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 1.6e-195 687.2 811 58.2
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 4.7e-195 685.6 806 57.9
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.1e-194 684.5 808 57.4
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 1.8e-194 683.7 806 56.7
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 4.0e-194 682.6 806 57.8
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 6.8e-194 681.8 806 57.8
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 6.8e-194 681.8 812 57.6
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 6.8e-194 681.8 813 57.9
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 1.5e-193 680.6 827 56.5
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 3.4e-193 679.5 816 57.0
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 7.6e-193 678.3 802 56.6
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 1.3e-192 677.6 809 56.9
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 4.9e-192 675.6 820 57.1
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 4.9e-192 675.6 820 57.1
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 1.9e-191 673.7 815 56.6
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 2.4e-191 673.3 815 56.7
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 4.2e-191 672.5 816 56.5
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 4.2e-191 672.5 831 56.2
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 4.2e-191 672.5 831 56.2
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 1.2e-190 671.0 810 57.4
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 2.1e-190 670.2 804 58.1
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 2.7e-190 669.8 832 56.5
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 2.3e-189 666.8 814 56.9
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 8.7e-189 664.8 805 56.5
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 8.7e-189 664.8 826 56.2
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 7.3e-188 661.8 814 56.4
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 1.3e-187 661.0 827 55.6
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 1.3e-187 661.0 829 55.1
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.3e-187 661.0 809 57.4
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 1.6e-187 660.6 815 56.6
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 1.6e-187 660.6 805 58.3
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 4.8e-187 659.1 821 55.5
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 6.2e-187 658.7 807 56.8
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 1.4e-186 657.5 753 60.6
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 3.1e-186 656.4 827 55.5
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 1.5e-185 654.1 827 56.1
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 2.0e-185 653.7 842 55.0
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 7.6e-185 651.7 787 56.0
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 1.9e-183 647.1 812 56.0
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 1.2e-182 644.4 827 55.5
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 2.7e-182 643.3 780 57.4
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 1.0e-181 641.3 811 55.5
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 2.3e-181 640.2 833 54.6
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 2.3e-181 640.2 817 55.2
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 6.6e-181 638.6 841 53.7
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 6.6e-181 638.6 841 53.7
AUR62034569 Chenopodium quinoa HOM05D003747 ORTHO05D005080 7.3e-180 635.2 806 55.5
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 4.8e-179 632.5 821 55.1
AUR62014428 Chenopodium quinoa HOM05D003747 ORTHO05D005080 4.0e-178 629.4 806 55.5
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 1.2e-177 627.9 805 53.7
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 1.2e-177 627.9 821 55.1
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 3.4e-177 626.3 848 50.8
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 7.6e-177 625.2 817 51.0
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 8.4e-176 621.7 825 54.2
GSVIVG01009826001 Vitis vinifera HOM05D003747 ORTHO05D005080 2.7e-174 616.7 731 59.4
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 7.9e-174 615.1 805 53.8
Nn6g32245 Nelumbo nucifera HOM05D003747 ORTHO05D005080 1.5e-172 610.9 731 59.0
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 7.6e-169 598.6 807 52.5
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 9.3e-167 591.7 803 54.4
ECA232G3638 Erigeron canadensis HOM05D003747 ORTHO05D005080 7.9e-158 562.0 729 53.9
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 4.5e-153 546.2 818 51.1
unitig_899.g15539 Utricularia gibba HOM05D003747 ORTHO05D005080 5.1e-149 532.7 714 54.5
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 2.5e-143 513.8 817 46.6
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 7.0e-138 495.7 817 45.8
CDE05G0031 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.0e-136 491.9 687 54.3
MBI16_g07670_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 2.2e-136 490.7 824 48.1
Pp3c1_8310 Physcomitrium patens HOM05D003747 ORTHO05D005080 1.5e-132 478.0 813 45.5
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 2.7e-126 457.2 822 44.0
Mapoly0016s0016 Marchantia polymorpha HOM05D003747 ORTHO05D005080 2.8e-123 447.2 835 43.8
unitig_746.g26813 Utricularia gibba HOM05D003747 ORTHO05D005080 1.5e-119 434.9 656 52.7
HPP92_006843 Vanilla planifolia HOM05D003747 ORTHO05D005080 1.1e-114 418.7 801 43.9
SMO331G0035 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 1.7e-112 411.4 837 41.8
CBR_g21825 Chara braunii HOM05D003747 ORTHO05D005080 1.0e-109 402.1 889 39.6
CDE02G1942 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.6e-105 388.3 806 43.2
CDE10G1342 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 6.6e-104 382.9 815 33.3
CsaV3_1G045450 Cucumis sativus L. HOM05D003747 ORTHO05D005080 2.7e-97 360.9 308 60.1
CsaV3_UNG233290 Cucumis sativus L. HOM05D003747 ORTHO05D005080 2.7e-97 360.9 308 60.1
FAN14G4182 Fragaria x ananassa HOM05D003747 ORTHO05D005080 6.8e-93 346.3 377 50.9
CsaV3_1G045460 Cucumis sativus L. HOM05D003747 ORTHO05D005080 2.6e-92 344.4 381 52.0
Rhsim06G0014300 Rhododendron simsii HOM05D003747 ORTHO05D000001 4.0e-85 320.5 345 53.3
HPP92_027213 Vanilla planifolia HOM05D003747 ORTHO05D005080 6.4e-83 313.2 381 47.2
CsaV3_UNG233280 Cucumis sativus L. HOM05D003747 ORTHO05D005080 1.9e-74 285.0 361 48.5
BolC8t46977H Brassica oleracea HOM05D003747 ORTHO05D016772 9.3e-42 176.4 199 50.3
Zm00001eb159690 Zea mays HOM05D003747 ORTHO05D051588 9.3e-42 176.4 168 56.0
C08p01770 Brassica napus HOM05D003747 ORTHO05D016772 6.7e-40 170.2 200 49.5
HPP92_027212 Vanilla planifolia HOM05D003747 ORTHO05D051588 4.8e-38 164.1 197 45.7
FAN20G0559 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.2e-36 159.5 223 43.5
FAN05G3899 Fragaria x ananassa HOM05D003747 ORTHO05D005080 3.4e-36 157.9 223 43.0
FAN12G1591 Fragaria x ananassa HOM05D003747 ORTHO05D005080 4.5e-36 157.5 216 43.5
FAN03G1393 Fragaria x ananassa HOM05D003747 ORTHO05D005080 5.5e-34 150.6 188 46.3
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.1e-31 142.9 98 71.4
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.5e-31 141.7 98 71.4
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 7.4e-31 140.2 98 70.4
Rhsim06G0014800 Rhododendron simsii HOM05D003747 ORTHO05D005080 2.2e-27 128.6 640 24.8
HanXRQChr13g0424291 Helianthus annuus HOM05D003747 ORTHO05D005080 4.2e-26 124.4 222 37.4
Rhsim06G0013900 Rhododendron simsii HOM05D003747 ORTHO05D005080 1.6e-25 122.5 640 24.1
Lj3A744G93 Lonicera japonica HOM05D000041 ORTHO05D000452 1.1e-23 116.3 96 59.4
TAR628G1670 Trochodendron aralioides HOM05D003747 ORTHO05D016772 1.1e-23 116.3 226 38.1
Lj3A743G72 Lonicera japonica HOM05D000041 ORTHO05D000452 4.4e-23 114.4 95 58.9
HPP92_027211 Vanilla planifolia HOM05D003747 ORTHO05D016772 9.1e-21 106.7 88 59.1
Pp3c1_6530 Physcomitrium patens HOM05D003747 ORTHO05D005080 4.5e-20 104.4 87 55.2
Lsat_1_v5_gn_4_36661 Lactuca sativa HOM05D003747 ORTHO05D005080 1.0e-19 103.2 89 59.6
unitig_746.g26812 Utricularia gibba HOM05D003747 ORTHO05D016772 2.9e-19 101.7 94 53.2
HanXRQChr14g0454921 Helianthus annuus HOM05D000041 ORTHO05D000452 2.5e-18 98.6 135 45.9
HanXRQChr17g0545051 Helianthus annuus HOM05D000041 ORTHO05D000452 2.5e-18 98.6 135 45.9
BcaC07g36860 Brassica carinata HOM05D003747 ORTHO05D016772 1.0e-16 93.2 76 61.8
unitig_899.g15538 Utricularia gibba HOM05D003747 ORTHO05D016772 1.4e-16 92.8 77 58.4
Lj3A744G94 Lonicera japonica HOM05D000041 ORTHO05D004955 1.1e-15 89.7 72 56.9
Cpa.g.sc99.31 Carica papaya HOM05D003747 ORTHO05D005080 3.3e-15 88.2 102 48.0
BcaC05g24429 Brassica carinata HOM05D003747 ORTHO05D016772 3.7e-14 84.7 71 57.7
Lj3A751T54 Lonicera japonica HOM05D000041 ORTHO05D000452 1.4e-13 82.8 112 41.1
Lsat_1_v5_gn_8_75581 Lactuca sativa HOM05D000041 ORTHO05D000452 1.2e-12 79.7 86 41.9
Nn5g30522 Nelumbo nucifera HOM05D003747 ORTHO05D005080 3.5e-12 78.2 69 52.2
BcaC07g36859 Brassica carinata HOM05D003747 ORTHO05D016772 8.5e-11 73.6 98 44.9
Zm00001eb026790 Zea mays HOM05D003747 ORTHO05D029724 2.5e-10 72.0 165 77.6
Lj3A751T55 Lonicera japonica HOM05D000041 ORTHO05D000452 3.6e-09 68.2 108 35.2


User provided reference genes

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